SimpleSearch - Line and FST details


Line specific information

 
Line ID 823C07
Vector Used pAC106
Line Availability available as T3 set from NASC (N478943)
Segregation Analysis 50:19:17
Confirmed for Hit At4g36880 At5g18920
Parent of DUPLO pair none
Parent of pair(s) 7169, 9863, 90269, 90296, 90317, 90320, 90321, 90325, 90326

Gene hit At4g36880

 
Sequence (A. th genome BLAST matches underlined) 
>51-K025529-022-823-C07-8409
GNAGCCATTTACATTGAATATATCCTGAATACCGGGATTTAAACCGGGATCAAAATCAAT
GATCGGGTCTGCGTACCGATTGGAAATGTTGAAGGATTATTGCCGCGGGCTTCTATAGCT
ACACTAACCGGTTGGTATGAAATAGCTTTCTTCAACGCAGTCTCGTCTTTAGTAGGAACA
TCTTCGTATGGGATCCTCCCTATAGTGAG
GenBank Accession CR360783 [GenBank]
Graphic View Graphic view of gene At4g36880
Predicted Position of Insertion Chr4:17374993 - go to primer design
BLAST e Value 3e-37
Hit Clone Code (BAC ID) AP22
Hit Gene Code At4g36880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cysteine proteinase1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g18920

 
Sequence (A. th genome BLAST matches underlined) 
>51-K025509-022-823-C07-8409
ATTGAATATATCCCAAGTAAATAAATCAAAAATCAAATCTTTTAACGAGCTTGTTTTGCT
CTTCTTATATAGTTTCTGGAAGAGTGATGTATGGGATCCTCCCTATAGTGAGAGTTGGTA
TGAAATAGCTTTCTTCAACGCAGTCTCGTCTTTAGTAGGAACATCTTGGTATGGGATCCT
CCCTATAGTGAGGNGGGGCCNNNNNNGGAATNNNNNTCTATANNATNTCNAAACCNNNCN
AAANNNTTTCCAAAATCATTATAAATTTTANCACCAAGAATGAGTTTTTCTTCCGGTTCG
AGATGCTCGCTGATTCCTACAATCAAGGGCTCTCTCCGAAGAACGGTCTATTCTTCTGCG
GCGGATTCCCTTATCGGATAATCTATTCCAAATG
GenBank Accession CR360782 [GenBank]
Graphic View Graphic view of gene At5g18920
Predicted Position of Insertion Chr5:6311075 - go to primer design
BLAST e Value 5e-39
Hit Clone Code (BAC ID) F17K4
Hit Gene Code At5g18920 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cox19-like CHCH family protein
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences


Last Updated on 10.06.2021 13:37