SimpleSearch - Line and FST details


Line specific information

 
Line ID 825B03
Vector Used pAC106
Line Availability available as T3 set from NASC (N479119)
Segregation Analysis 50:5:3
Confirmed for Hit At2g42290
Parent of DUPLO pair 6801
Parent of pair(s) none

Gene hit At2g42290

 
Sequence (A. th genome BLAST matches underlined) 
>18-K025532-022-825-B03-8409
CGGAAGAAGCCATTTACAATTGAATATATCCTGAAGTTCCCTCAATTCACCGGCGAGATT
CCACCGTCGTATGGGATCCTCCCTATAGTGAGACAGTTAAGCCCCTAATTATTAAGCTTA
AAAGACTTCTCGGCTTTTGTGAGACATGACAATATCAACGTATGGGATCCTCCCTATAGT
GAGAGACTTTTAAACATCATCCGTCGGATGGCGTTGCGAGAGAAGCAGTCGATCCGTGAG
ATCAGCCGACGCACCGGGCAGGCGCGCAACACGATCGCAAAGTATTTGAACGCAAGTATG
GGATCCTCCCTATAGTGAGNNNNNNNNNNNNNNNNN
GenBank Accession CR360995 [GenBank]
Graphic View Graphic view of gene At2g42290
Predicted Position of Insertion Chr2:17618950 - go to primer design
BLAST e Value 2e-07
Hit Clone Code (BAC ID) MHK10
Hit Gene Code At2g42290 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit T6A9

 
Sequence (A. th genome BLAST matches underlined) 
>18-K025532-022-825-B03-8409
CGGAAGAAGCCATTTACAATTGAATATATCCTGAAGTTCCCTCAATTCACCGGCGAGATT
CCACCGTCGTATGGGATCCTCCCTATAGTGAGACAGTTAAGCCCCTAATTATTAAGCTTA
AAAGACTTCTCGGCTTTTGTGAGACATGACAATATCAACGTATGGGATCCTCCCTATAGT
GAGAGACTTTTAAACATCATCCGTCGGATGGCGTTGCGAGAGAAGCAGTCGATCCGTGAG
ATCAGCCGACGCACCGGGCAGGCGCGCAACACGATCGCAAAGTATTTGAACGCAAGTATG
GGATCCTCCCTATAGTGAGNNNNNNNNNNNNNNNNN
GenBank Accession CR360995 [GenBank]
Graphic View Graphic view of sequence CR360995 of line 825B03
Predicted Position of Insertion Chr1:483903 - go to primer design
BLAST e Value 2e-20
Hit Clone Code (BAC ID) T6A9
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit CR360994 [GenBank]


Last Updated on 10.06.2021 13:37