SimpleSearch - Line and FST details


Line specific information

 
Line ID 827C11
Vector Used pAC106
Line Availability available as T3 set from NASC (N479331)
Segregation Analysis 50:7:7
Confirmed for Hit At4g39390
Parent of DUPLO pair none
Parent of pair(s) 4344, 4369, 4370, 4384, 4389
Note

Gene hit At4g39390

 
Sequence (A. th genome BLAST matches underlined) 
>83-K025710-022-827-C11-8409
TTTACCACCCGCGTTTAGAAGATGCATTACCGTATGGGATCCTCCCTATAGTGAGACTTA
NCTGNNAATCCCNTCATGGATTTGACGCCGCCCAATGAACCCCCCGCCGCCGATTGCACC
CTAAAGGCACGTTTGACTGTAGTCCCACCTGAGGAGGAGATCGTAAAACCCATTTTTCTC
ACTTCTGTATGAATTGCCAAGCTAGTATGCGATCCTCCCTATAATGAGTTGAACGCAAGT
ATGGGATCCTCCCTATAGTGAGNC
GenBank Accession CR399776 [GenBank]
Graphic View Graphic view of gene At4g39390
Predicted Position of Insertion Chr4:18317805 - go to primer design
BLAST e Value 1e-05
Hit Clone Code (BAC ID) F23K16
Hit Gene Code At4g39390 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation nucleotide sugar transporter-KT 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g38430

 
Sequence (A. th genome BLAST matches underlined) 
>83-K025720-022-827-C11-8409
TGGGATCCTCCCTATAGTGAGAACCTTACTCTTCCACCATTGCTTGTAATGGAAGTAATG
TCACTGATGACCTTCTTAGCTGGTAATCCAGGCATACATTCCACCCCGCCCAATGAACCC
CCCGCCACCGAATGCACCCTAAAGGCACTTTTGACTGTCATCCCACCTAAGGAGGATATC
AAAAAACCCACTTTTCTCACTTCCGTACGAATTGCCAAGCTGGCATGCAATCCTCCCTAT
AATGAGTTGAACGCAGGTATGGGATCCTCCCTATAGTGAG
GenBank Accession FR816361 [GenBank]
Graphic View Graphic view of gene At5g38430
Predicted Position of Insertion Chr5:15384979 - go to primer design
BLAST e Value 3e-06
Hit Clone Code (BAC ID) MXI10
Hit Gene Code At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribulose bisphosphate carboxylase (small chain) family protein
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37