SimpleSearch - Line and FST details


Line specific information

 
Line ID 829C09
Vector Used pAC106
Line Availability available as T3 set from NASC (N479521)
Segregation Analysis 50:44:42
Confirmed for Hit At5g02940 At5g02940
Parent of DUPLO pair 1776
Parent of pair(s) none

Gene hit At5g02940

 
Sequence (A. th genome BLAST matches underlined) 
>67-K025707-022-829-C09-8409
CCATTTACAATAGTGAATAATCGCATAAGTGAACAATCGCATATAGGTAAGCCATTTGCT
TCTTGGAGGTAAGCATCATGATTTATAACATGTGGAATTCTCGCTCTGATAAAAAAATCA
ATGAGTCTTCCATTTCGAGGGAAACAGGTTCTGTCTTTGGAACCGGATTGATTATCTGCT
ACTACAACAAAAACCGAGTTTGTGACCAGGAAATGTCTGGTTGCCGAGTAATAACAGACA
GTATGGGATCCTCCCTATAGTGAGCTCCCTATAGTGAG
GenBank Accession CR399950 [GenBank]
Graphic View Graphic view of gene At5g02940
Predicted Position of Insertion Chr5:684632 - go to primer design
BLAST e Value 1e-55
Hit Clone Code (BAC ID) F9G14
Hit Gene Code At5g02940 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ion channel POLLUX-like protein, putative (DUF1012)
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g02940

 
Sequence (A. th genome BLAST matches underlined) 
>67-K025707-022-829-C09-8409
CCATTTACAATAGTGAATAATCGCATAAGTGAACAATCGCATATAGGTAAGCCATTTGCT
TCTTGGAGGTAAGCATCATGATTTATAACATGTGGAATTCTCGCTCTGATAAAAAAATCA
ATGAGTCTTCCATTTCGAGGGAAACAGGTTCTGTCTTTGGAACCGGATTGATTATCTGCT
ACTACAACAAAAACCGAGTTTGTGACCAGGAAATGTCTGGTTGCCGAGTAATAACAGACA
GTATGGGATCCTCCCTATAGTGAGCTCCCTATAGTGAG
GenBank Accession CR399950 [GenBank]
Graphic View Graphic view of gene At5g02940
Predicted Position of Insertion Chr5:685708 - go to primer design
BLAST e Value 1e-08
Hit Clone Code (BAC ID) F9G14
Hit Gene Code At5g02940 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ion channel POLLUX-like protein, putative (DUF1012)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37