SimpleSearch - Line and FST details


Line specific information

 
Line ID 829G12
Vector Used pAC106
Line Availability available as T3 set from NASC (N479572)
Segregation Analysis 50:21:19
Confirmed for Hit At4g02920
Parent of DUPLO pair 12741
Parent of pair(s) none

Gene hit At3g56070

 
Sequence (A. th genome BLAST matches underlined) 
>95-K025707-022-829-G12-8409
AATTGAATAAGAATTTATCTTTTCTTATCGACAATTTCGATGGATGGGACATTTATTACT
CGTGTTTTATGATTTTTAACATTGAATGAGAAAATCGGAGTCAGATCTGAATAATTGAAT
CCTTATTCGTCTGCATTGATCGGAAAATAGTATGGGATCCTCCCTATAGTGAGACCAATT
AATCAAGCCAAAAGGGGGAGAGAGGTACCTATACAAAACAAATCATCTCCCCGCTTACGA
GAGCCTTCTCTCTTTAATGATAGGCAATGATCATCGACACAAACACACAACAGTATGGGA
TCCTCCCTATAGTGAGACTTATT
GenBank Accession CR399996 [GenBank]
Graphic View Graphic view of gene At3g56070
Predicted Position of Insertion Chr3:20807830 - go to primer design
BLAST e Value 3e-65
Hit Clone Code (BAC ID) F27K19
Hit Gene Code At3g56070 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation rotamase cyclophilin 2
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At4g02920

 
Sequence (A. th genome BLAST matches underlined) 
>95-K025744-022-829-G12-8409
AAGAAGCCAGAAGAAAATGCGAGCTCCCCTCACCCAGGAAACACCACACCAAGCCAAAAG
CTAAGGAGAGGGACCCATACAAAAGACATCATCTCCCCCCCTACCAGAGCCTTCTCTCTT
TAATGATAGGCCATGATCATCGACACAAACACACAACGGTATGGGATCCTCCCTATAGTG
AGAAGAACTGGACTTCCTANACTCNAACTCCAACATTCCTTTAACAGCCACATATCGAAT
CCTTTTTCCTTGAACTCCTCCGACTGAGACAGAGGAAGCTCCATCACCTTTTCCTGTCCT
GCCAACTTATCAGCGATTCCAAAGCTCAAAATCAGACATTCTGGTG
GenBank Accession CR399997 [GenBank]
Graphic View Graphic view of gene At4g02920
Predicted Position of Insertion Chr4:1293959 - go to primer design
BLAST e Value 6e-51
Hit Clone Code (BAC ID) T5J8
Hit Gene Code At4g02920 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37