SimpleSearch - Line and FST details
Line specific information
| Line ID | 835C03 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N480091) |
| Segregation Analysis | 50:35:32 |
| Confirmed for Hit | At3g28956 At3g28956 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12853 |
Gene hit At3g28956
| Sequence (A. th genome BLAST matches underlined) | >19-K025700-022-835-C03-8409 TACCTCCTCTGCCTACAGCTGAAAGTCCTAAAGAGAATGATGAGTAAGAAGAAACAGAGA ATGGTGTAAGAGTCGTGACTTGGAATAATTTTCCCCTTAAATCGATTATTTTTTGTATCG GGGACGATTTTACCGTTTTTGGTGGAAGAAGGCAAGGCGCCGATTTTTACTATTGATGGA GAAAGATGAAATTTCTCAGTTTTTCGTAAAAATTAGGATTTGTGAGTGATCAATAATAAC AATAATAAAATGGGCTGACCATAGACTTTCCATATAAACCTGGTCTTTATTGGGGATGGA CATTTTTTGGACCATTGTCCATGGACGGACTCACTTGGCGCACAAAACAAAATTGCCTGT ATGGAATCCTACCTAGAATGAGAGAAGACTCGCGATCCTCTGTTCTCACCTGAACCCACC TGGTCCGAACCCGACCCGAGACCCGACTCTCAGGGTCTCCGATTGTAGCTCTGGTTCTTC CGGCGACGGGAAAGTGGAATCATCTACTCTCCAAAACGACTGCGTTT |
| GenBank Accession | CR400374 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:10980865 - go to primer design |
| BLAST e Value | 3e-105 |
| Hit Clone Code (BAC ID) | K5K13 |
| Hit Gene Code | At3g28956 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RNA polymerase II, Rpb4, core protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g28956
| Sequence (A. th genome BLAST matches underlined) | >19-K025719-022-835-C03-8409 CTCCTCTGCCTACAGCTGAAAGTCCTAATGAGTGTGATGAAGATCAAGAGATCTAGAATG GTGATTTCTCAGTGACTCGGAAAACTTTTCACCCTATGTCCTCATTTTGTTGAAACAGAC GTGATATTACCGTTTACTTCAACTGAGCCTATTCACCTATTAATCTCTTTGGAGCCCAAA ATCGATATCACACGTGATGACTCTTACCTCTAGGGTTTCGATTTCTCATTTCAACACATA GGGTCTCGACCTACACTGAAAACTTTACTCTTTCGACTGGGACATTGATGTGCTTCTATT CTTGATGACCCTTAGACCATGCACCGACCATGTGGGACCTCAATCTATTATTGTATATAT GGTCTCCGCTGTAGTTAGAGACTTAATGCGTCATTGTCAGTTGTCATTTGGAACCACCCG GTGCAAACACTGATCGATACCCGACTCTCAGGGTCTCCGATTGAAGCTCTGGTTCTTCCA GCGACGCCCAAGTGTTATACATCTACATCTC |
| GenBank Accession | CR400375 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:10981951 - go to primer design |
| BLAST e Value | 7e-17 |
| Hit Clone Code (BAC ID) | K5K13 |
| Hit Gene Code | At3g28956 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RNA polymerase II, Rpb4, core protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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