SimpleSearch - Line and FST details
Line specific information
| Line ID | 851E09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N481657) |
| Segregation Analysis | 50:26:22 |
| Confirmed for Hit | At1g12150 |
| Parent of DUPLO pair | 12343 |
| Parent of pair(s) | none |
Gene hit F8D20
| Sequence (A. th genome BLAST matches underlined) | >69-K025843-022-851-E09-8409 CCATTTTACATGGGAATTGCGTATCCTTGAGAGGGACAGCTCCATCATCGCCTTGGGAGT ATGGGACCATCCTGACCGCGAGACGAAGACCATCGATTAACGTGTATCGTATGGGATCCT CCCTATAGTGAGATANCTCCTTCGGTCCTCCGATCGTTGTCANAANTAAGTTGGCCGCAG TGTTATCACTCATGGTTATGGCAGCACTGCATAATTCTCTTACTGTCATGCCATCCGTAA GATGCTTTTCTGTGACTGGAGAGTATGTCTTCCTCCCTAGAGAGAGACTCTCAAATTNAA AGGACCAATACTATTGTCGCTCTCGAGGATCAATCTTATCAGTAAAAAACCTTTTGACAG TTTAGTGGTTGAACGCTTAAAAACTTATAATTCGCATATATGATAGAACTCATCACTTTA GATAGGGGTAAATGGGAGAAAAAAAGAGTTTTTTTTTTTTCCCCCCCCCCCCGAAAATAN GGTGTTCTTTTTAAAAAAAAAAAGGGGGTTGTNTGTTTTTCGTCGTCCACAAAGA |
| GenBank Accession | CR402026 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:16895241 - go to primer design |
| BLAST e Value | 1e-05 |
| Hit Clone Code (BAC ID) | F8D20 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit MWJ3
| Sequence (A. th genome BLAST matches underlined) | >69-K025842-022-851-E09-8409 ATTGAATTACTTACCTCAGAGGAGAGTCGAGATCGCCTTGGGAGTATGCTACCATCCCTT CCGGGAGACAAAGAGCATCGCTTATTACGTGATGCCCCGTGTTGTGCAAATAAGCGGTTA GCTCCTTCGGTCCTCCGATCGTTGTCAGAAGTATGTTGGCCGCAGTGTTATCACTCATGG TTATGGCAACACTGCATAGTTCTCTTACTGTCATGCCATCCGTAAGATGCTTTTCTGTGA CGGGAAGATAAGAAACCTATAATTTCACAAATCCATAGTCGGGCTCGTCTAGTTATAACA AACAAATTCATGAGATTGTTTTCTATCTAATATCTAATGAGATTGACTCAGTAACCAGAA TACTTTTTAAGCAAATCAAACATTATCACCATAAAAAATAGTTCGTATTTGAGTTGGCGC ATACTATTTTATTTTTTGTGCCCCCCCAAAATGTGAATCACCACTTTGAAAAAACAAATT TCAGATACTANGATTTATGTGT |
| GenBank Accession | CR402025 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:22620897 - go to primer design |
| BLAST e Value | 2e-84 |
| Hit Clone Code (BAC ID) | MWJ3 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g12150
| Sequence (A. th genome BLAST matches underlined) | >69-K025842-022-851-E09-8409 ATTGAATTACTTACCTCAGAGGAGAGTCGAGATCGCCTTGGGAGTATGCTACCATCCCTT CCGGGAGACAAAGAGCATCGCTTATTACGTGATGCCCCGTGTTGTGCAAATAAGCGGTTA GCTCCTTCGGTCCTCCGATCGTTGTCAGAAGTATGTTGGCCGCAGTGTTATCACTCATGG TTATGGCAACACTGCATAGTTCTCTTACTGTCATGCCATCCGTAAGATGCTTTTCTGTGA CGGGAAGATAAGAAACCTATAATTTCACAAATCCATAGTCGGGCTCGTCTAGTTATAACA AACAAATTCATGAGATTGTTTTCTATCTAATATCTAATGAGATTGACTCAGTAACCAGAA TACTTTTTAAGCAAATCAAACATTATCACCATAAAAAATAGTTCGTATTTGAGTTGGCGC ATACTATTTTATTTTTTGTGCCCCCCCAAAATGTGAATCACCACTTTGAAAAAACAAATT TCAGATACTANGATTTATGTGT |
| GenBank Accession | CR402025 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:4125144 - go to primer design |
| BLAST e Value | 4e-12 |
| Hit Clone Code (BAC ID) | T28K15 |
| Hit Gene Code | At1g12150 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | weak chloroplast movement under blue light protein (DUF827) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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