SimpleSearch - Line and FST details


Line specific information

 
Line ID 856H01
Vector Used pAC161
Line Availability available as T3 set from NASC (N482165)
Segregation Analysis 50:44:40
Confirmed for Hit At1g15330
Parent of DUPLO pair 639
Parent of pair(s) none

Gene hit At4g20370

 
Sequence (A. th genome BLAST matches underlined) 
>08-K025796-022-856-H01-8409
GNAGCCATTTACAATTGAATATATCCTGAATATGAGTATATACATGATTGTCTACATTGC
CTAGAATATGCACATTTAATATTGGACATGTCACTAATATGGTTGATTTGAGAGTCTGTT
CTGACAGTTAGGACTACTACCTATAATATCTCGGTCGGTTTCGAATTCCTAAGCGAGAGA
CAAATATACCGTATGGGATCCTCCCTATAGTGAGAGAAGTTAGAGGAAACGCACCAGGTA
TATAGATGAGGCTACGAAAGAAAAGAATGATCAAATCTAGTTACGCTTAAATTTGGATAT
ATCTAAGGTTTCTTCGTCAATATATGGAGCTTACGAAAACGAAAGAGTGAGCTACGAGGA
ACTAAATCAATGAAGATAAGAGGAATGAAGGAGATAAGATCACCAATGTGCAAAAATTTC
TGAAATCGTCTCCTCCAATCACCGATATTGGTATTGGTACAATCACCAAACGCTCTAAAT
ACCATCTCTCTACAATATCACCA
GenBank Accession CR402633 [GenBank]
Graphic View Graphic view of gene At4g20370
Predicted Position of Insertion Chr4:11002400 - go to primer design
BLAST e Value 1e-110
Hit Clone Code (BAC ID) F9F13
Hit Gene Code At4g20370 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PEBP (phosphatidylethanolamine-binding protein) family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At1g15330

 
Sequence (A. th genome BLAST matches underlined) 
>08-K025795-022-856-H01-8409
TCCCTATAGTGACACCCACTGGAACGGCTGACATGGAGATAGCCACCAATGTGTTCATTG
CGTGTCAAAATGTAGCCGTGTATGGTATGGGATCCTCCCTATACTGAGGCAAAAATGCTC
CACTAAATCTAGCGAAACCCCAAGACTACATCCCCACACCACGCAGACATCAACAATTAA
AATAAATCTAATCCTAACATCAAATACTAAAACAGTACAACCATCCTAAACAATTAACAA
TAGAAATAAGAACTAAATACTCGAAAAAAACTACTCTAAACCAATAATACCAACTGCAGA
TCATATACACCTACTCTTAACTCCAACGTCTCTACACATACTATGCCCACTTCACAAGCA
AACAACAACTACAATTATCC
GenBank Accession CR402632 [GenBank]
Graphic View Graphic view of gene At1g15330
Predicted Position of Insertion Chr1:5274640 - go to primer design
BLAST e Value 3e-16
Hit Clone Code (BAC ID) F9L1
Hit Gene Code At1g15330 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cystathionine beta-synthase (CBS) protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37