SimpleSearch - Line and FST details


Line specific information

 
Line ID 864A05
Vector Used pAC161
Line Availability available as T3 set from NASC (N482853)
Segregation Analysis 50:40:37
Confirmed for Hit At5g35790
Parent of DUPLO pair none
Parent of pair(s) 3849, 3850, 7167

Gene hit At3g13030

 
Sequence (A. th genome BLAST matches underlined) 
>33-K025981-022-864-A05-8409
GAAGCCTTTACAATTGAATATATCCTGTCAGCTCAGACATGTCCCAGGAAACTTGTATGG
GATCCTCCCTATAGTGAGACCTATTACTCCTGCCCTTTGGAATCCTCCTTAATCAGAGAA
ATTTTGGACATTGTAATAATGAAGATGAATGCAAATTACTTTTTTACAGAAAACCCCACC
AAGCGAGTCCAAGGTATTCTTGGGGGGGGGGGGGTCCCTGATTTTGACTTTTCCAACATA
GAGATAGAATGATGAATGATGAGAGTGACTATTCTTCCTAAAGAAGATTTGCTTACCGTT
TCAATTTGTATGTCTGCAGGACCAAATATCAATGGTATGTTACTTGCAGAAAATGGAGAT
ATTTGCACAAAAATATATTGAAAGGAGCTCATCTAAGAATCAGTAATGGATTGAAGTAGC
GGGGGGGGGGGTTAAATAAATTATGTTTGT
GenBank Accession CR403528 [GenBank]
Graphic View Graphic view of gene At3g13030
Predicted Position of Insertion Chr3:4171810 - go to primer design
BLAST e Value 2e-14
Hit Clone Code (BAC ID) MGH6
Hit Gene Code At3g13030 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hAT transposon superfamily protein
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At5g35790

 
Sequence (A. th genome BLAST matches underlined) 
>33-K025980-022-864-A05-8409
GAAGCCACTTACAATTGAATATATCCTGNTCACCTCAGACATGTCCCAGGAAACTTGTAT
GGNGATCCTCCCTATAGTGAGACCTATTACTCCCCCCCATAAAGGAAATCTTTTATCCAC
TCCCAAATGTAAATGCCCACAACGAAATTAAAGATGAACCCCCACAATCCATAACGAATA
ATCATGAATTTGGTTATTNNNAGGGGGGGGGGGGGGGGGNNTTCTTCCATTTNNAAAATT
ATTAACCCGCCCTCTCNTCCTATTTTAACCCCAACGGGAAGGGAAATTANNANNCTTAAC
AAACAATNGTTCTACATTTGGAAAGAAGAATATCGAAAGCAGCTAGAGGATGCCCCAAAC
AAAGAAGGTAGCGAAGACAGAAGAAACTCACCCTAACCGGAAAACCAACAAATTAAGAAC
AAAATAGGGGGGGGGGGGGGAGAAAATTACGAAGTATTTTTTCCCCACCACA
GenBank Accession FR816812 [GenBank]
Graphic View Graphic view of gene At5g35790
Predicted Position of Insertion Chr5:13957379 - go to primer design
BLAST e Value 6e-05
Hit Clone Code (BAC ID) MWP19
Hit Gene Code At5g35790 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation glucose-6-phosphate dehydrogenase 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37