SimpleSearch - Line and FST details
Line specific information
| Line ID | 870C03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N483451) |
| Segregation Analysis | N/A (line seemingly not resistant, T2 plants grown without drug) |
| Confirmed for Hit | At1g61260 |
| Parent of DUPLO pair | 2773 |
| Parent of pair(s) | none |
Gene hit At1g61260
| Sequence (A. th genome BLAST matches underlined) | >19-K026081-022-870-C03-8409 ATACGTGGAACATGATAACGGACGGGAACTCCACGCCCTTGACTAGACCGTTATACCGGA GATCCGGGGGGGGGGGGGGGGGANATTCCCTNTNANTTNACNNTAANTTNAAANCCNTTT ATAATAAACCTAATACATATATGCCCCNTANTAAATATTATCCCCTNAAAAACACCCAAA TTAAAAAACCCCTCCTCTCTCCACTGCAAACTACTCCCCTCNCCCAGCCCTCAGCAGAGC TTATGACAGCCACCAGCGACCCATTTTCATTTCCTCAGGGGGGGGGGGGTATACATGTTA TTTTTTTTTTCCCCCCCCTGCATGGTGCTCCCCCCCTCCAAAAAACCGCCAATTCAGTGT ACCCCAGTGAGTAATACCACTCACTATAGGCAGGATCCCATACCCC |
| GenBank Accession | FR816894 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:22594204 - go to primer design |
| BLAST e Value | 7e-14 |
| Hit Clone Code (BAC ID) | F11P17 |
| Hit Gene Code | At1g61260 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cotton fiber (DUF761) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T22I11
| Sequence (A. th genome BLAST matches underlined) | >19-K026116-022-870-C03-8409 GTTAATTAGTAAGTTTAGTTGACTTTTTAGGTATGGGATCCTCCCTATAGTGAGACNNNA CNCNCCNNCNNNNANNNNNNCACCCAATTCAGAGCAGCCCAGTGAGTAACACAACTCACT ATAGGGAGGATCCCATACGCCATGAGAAATACGACTCACTAGGGGGAGGACCCATAATCT CCTTACANGGAGGAACCCTTACAAGACAAATGAAATAAAGCAGAATACATTATCATGGAA TTCTGACTCTCACAACTCCAACCACCCTTAGTACCCTTAGATAAATCTCACACCCATTAT ATATATAACTCCTGAAAAGTGAATCACATACTAAAAGCAACGACCGCACTCAACGCAATC AATACCCTATGATAATCTCAATGCACAGGGGAGGAAGAAAAACATTTCCCTTTCATTATA CCGTAATTTACACTGATACATGGCTATTACACACACACAATATACATCATAACCCCCTTT AAACAAAATCAG |
| GenBank Accession | CR404320 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:7398373 - go to primer design |
| BLAST e Value | 4e-09 |
| Hit Clone Code (BAC ID) | T22I11 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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