SimpleSearch - Line and FST details


Line specific information

 
Line ID 870C04
Vector Used pAC161
Line Availability available as T3 set from NASC (N483452)
Segregation Analysis 50:7:6
Confirmed for Hit At3g44600 At5g05600
Parent of DUPLO pair none
Parent of pair(s) 69411, 97531, 97532

Gene hit At3g44600

 
Sequence (A. th genome BLAST matches underlined) 
>27-K026081-022-870-C04-8409
AGGCACATCCCATGTTGAATCTCATATTTCTCCTCGTTGATTGCTTTTCTTTTATTTCTT
CCCTTAAAGAAAAATTAATGTTTTGTTATTTTTATGATATTACGTCCGACTTGTATATGC
GTATGGGATCCTCCCTATAGTGAGAATGGTGTTGTTATCCGTGTTTGCTAAGGATGGCGG
CGCCCGATCACGGTCCAATTGCATGACATCCGCTAAGCATCGGGAGTGGTTTTTAAGATA
ATGTCAACTATTTGACAGGCAGAAGGTCCTCGTCTCGAAAGAGTGACTTTTTATTTGTTT
ATTGAATGAAGATAGTTGACCTGGCGGGGAAATTATAGTTAGACATGTTATGGTTTCCGC
AATTTTTTTGTTTGTGTCTAGTTCTATTATCAACCAATGACTCGTTTCAGCAATGCAGGT
TAGCATTGATGGTTTGCTTTGCCGTATGGGATCCTCCCTATAGTGAG
GenBank Accession CR404321 [GenBank]
Graphic View Graphic view of gene At3g44600
Predicted Position of Insertion Chr3:16168785 - go to primer design
BLAST e Value 1e-70
Hit Clone Code (BAC ID) F14L2
Hit Gene Code At3g44600 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cyclophilin71
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g05600

 
Sequence (A. th genome BLAST matches underlined) 
>27-K026116-022-870-C04-8409
CCCATGTTGAATCTCAGATTTCTCCTCGTTGATTGTTTTTCTTTTATTTCTTCCCTTAAA
GAAAAATTAATGTTTTGTTATTTTTATGATATTACGTCCGACTTGTATATGTGTATGGGA
TCCTCCCTATAATGAGAATGGGACTTTTAAACATCATCCGTCGGATGGCGTTGCGAGAGA
AGCAGTCTATCCGTGAGATCACCCGACGCACCGGGCAGGCGCGCAACACGATCGCAAAGT
ATTTGAACGCAGGTATGGGATCCTCCCTATAGTGAGA
GenBank Accession CR404322 [GenBank]
Graphic View Graphic view of gene At5g05600
Predicted Position of Insertion Chr5:1674571 - go to primer design
BLAST e Value 6e-54
Hit Clone Code (BAC ID) MOP10
Hit Gene Code At5g05600 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37