SimpleSearch - Line and FST details
Line specific information
| Line ID | 878C04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N484220) |
| Segregation Analysis | 50:37:31 |
| Confirmed for Hit | At1g62870 |
| Parent of DUPLO pair | 12607 |
| Parent of pair(s) | none |
Gene hit At1g62870
| Sequence (A. th genome BLAST matches underlined) | >27-K114415-0022-878-C04-8409 ATTGTGTATTACCATTGGTTCAAGGTGACTCCAATACTACGCGCCTTTGCCTTGTACTGC CTTTGTTCTTACCATCAGTAAACCTTCATATTGCTTTTGTGACGCCTTTGTGGCTAATTC TTCCGCCTACTGTTGTTGCGTTGGTGATTGCGTTTGCGTTTGCTGTTGTGTCGCCGTTGT TGTTGCGTTTGTCNTCNTCNCNNTTGTAAAGTCAAAAAACTTAAACAACAACCCTGAACG AAATTAAGCTGAAACTAACCTGCCCGGCCGC |
| GenBank Accession | HE665009 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:23286266 - go to primer design |
| BLAST e Value | 1e-31 |
| Hit Clone Code (BAC ID) | F16P17 |
| Hit Gene Code | At1g62870 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g48560
| Sequence (A. th genome BLAST matches underlined) | >27-K026470-022-878-C04-8409 GNAGCCATTTACAATTGAATATATCCTGGTCTCGTCTTATTGACCAAGAAAGCACCCTCA CGTTCTTGCAGAGATCATCTCAGATTTATGGAAATCTATGACGTTATTCATTGGAGATTA ACTTACTTAAGAGTCAATTAGCCAATATAATTTTTTTTGTTAGAGTTGGTTGTATTTACT GAGTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | CR405392 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:19683606 - go to primer design |
| BLAST e Value | 3e-31 |
| Hit Clone Code (BAC ID) | MJE7 |
| Hit Gene Code | At5g48560 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | CR405393 [GenBank] |
Gene hit T30F21
| Sequence (A. th genome BLAST matches underlined) | >27-K114414-0022-878-C04-8409 AGATAGTCATGAATCAGCCATTTANATTTTCTCTTTCAAAATCATACCAAAGGAGCGGCC GAGTAGACCCCTCTACAATAGGTGTATTAAGTTTAGTCACATTTCAAGCCAGTATGTTCA GTCTTTAAATTACATTTAAAGGTTTTTGTTACGCATCTGTTCAGTACGTAAACTTATTGA AATAATTATCTTTGGATCACATTTTTTAATATGTTTTTGTTTATGATTTTATTTTATTTT AACTAATGTTTTCATTCTATAAAATATTTTTTTTCAAATAAGCTAAGTGATTGTAAAATT TCAATGCAGTAAAGCTTCGTTAATATTACTCATTTACAAAGTTAAGGTTTTGCTGTTTTG GTAATCAATCTCAAAAGTCAAATGTTATTTGCTAACCTGCCCGGCCG |
| GenBank Accession | HE665008 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:29588603 - go to primer design |
| BLAST e Value | 5e-59 |
| Hit Clone Code (BAC ID) | T30F21 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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