SimpleSearch - Line and FST details


Line specific information

 
Line ID 878E11
Vector Used pAC161
Line Availability available as T3 set from NASC (N484251)
Segregation Analysis 50:43:36
Confirmed for Hit At3g24500
Parent of DUPLO pair none
Parent of pair(s) 3173, 3223
Note

Gene hit At1g18570

 
Sequence (A. th genome BLAST matches underlined) 
>85-K026524-022-878-E11-8409
AGCCTTTACATTGAATATCAATGTTGGACCTTTATTGGTCATTATTGCTCAATTATTTTA
CTTAAATAATTCTTCTAATTGGATAGGACTCAAGAGATGCGGCAAAAGCTGCAGACTGAG
ATGGGCCAATTATCTTAGACCTGACATCAAAAGAGGAGAGTTCACTGAAGACGAAGAACG
TTCAATCATCTCTCTTCACGCCCTTCACGGCAACAAGTTAGTCTCTCTACCTCTACATTT
TATACTTATTTTTTGTTTGCATTAACATTTACTAATATTGTAATCTTATATGTGGTTTTA
ATCAGATGGTCTGCTATAGCTCGTGGACTACCAGGAAGAACCGATAACGAGATCAAGAAC
TACTGGAACACTCATATCAAAAAACGTTTGATCAAGAAAGGTATTGATCCAGTTACACAC
AAGGGCATAACCTCCGGTATGGGATCCTCCTNATAGTGAG
GenBank Accession CR405438 [GenBank]
Graphic View Graphic view of gene At1g18570
Predicted Position of Insertion Chr1:6389946 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F25I16
Hit Gene Code At1g18570 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation myb domain protein 51
Insertion Classification CDSi
Confirmation Status failed
Other FSTs Supporting this Hit CR405438 [GenBank]

Gene hit At3g24500

 
Sequence (A. th genome BLAST matches underlined) 
>85-K114414-0022-878-E11-8409
TTTGGTCNTGAATGTACACACCTCGCACAGAGCATTACCGAATGTGAATAATTTGTTTAT
TGCTATTCGCCTATGAATACGACGTGATCGTAATTTGTCCGTTTTATCAGAATGTACTTT
CATTTTATAATAACGCTACCCTGCCCGGCCGCTATAANATGCAAAACCTGTGGTGATTGC
TCTTGTTTTTTCTCAGGTGAGGTTGATGATACAGAAAGCGAGATTGGAGAAGAATATGTC
ACAAGCGGATTTGGCGAAACACATCAATGANAGGACTCATGTAGTTCATGAATATGAGAA
TGGTAATTCTGTTCCTAATCCGGCTGTGCTTGCGAAGATGGAAAAGGTTCTAGACTATCT
GGACTCTAANATNCTNNGTTATTTTTAANAGTTTCCNGTTTTTGAGTNCTCGTACTTCGT
CGNTTTTGTTTGGTTAGAGATTGAGANATGGACGGTTTGATTTAAATTGAGTACAGGAAT
GGAGAAATTTTTTGTTGGCGAGATTGGAGGAAGGTATTTAAACTTAAAATTTNATGTGAA
GGAGGTGAGAGCAGATTTGGCCCCAATTAGCAATTTATGGTGCGTAGACGAGGGTAAAGT
ATTGTATGCTTGTGAGATGTAATTGAGTAGTGAACAGACGCTATAGGATCAATTTTATAA
TTTTGTGT
GenBank Accession HE665028 [GenBank]
Graphic View Graphic view of gene At3g24500
Predicted Position of Insertion Chr3:8918833 - go to primer design
BLAST e Value 8e-64
Hit Clone Code (BAC ID) MOB24
Hit Gene Code At3g24500 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation multiprotein bridging factor 1C
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37