SimpleSearch - Line and FST details


Line specific information

 
Line ID 878F05
Vector Used pAC161
Line Availability available as T3 set from NASC (N484257)
Segregation Analysis 50:27:23
Confirmed for Hit At1g23200
Parent of DUPLO pair none
Parent of pair(s) 6852

Gene hit At4g22850

 
Sequence (A. th genome BLAST matches underlined) 
>38-K026524-022-878-F05-8409
TTCATTTTATAATAACGCTGCGGACATGTATGGGATCCTCCCTATAGAGAGTGAATTGAA
CTCAGATTCTTCTCCACACCTTAGATGGTGGATAGAAGAAAAGAACAAGAAGAAAACTTT
AGCTATGATTATGGAAAGAATTGTCATGTGGATCATGTGAGTCCAATTAAATGAAAAACA
TACACCAAATAATACAATTGTATGAAAATGTTGCATATGTATGGTTTATTAAAATTACTT
TTACTATTTTTAGTTAAAATTTCCTTTACTACCTCTACAATGGTTCAACCAACACCACCC
CAAATA
GenBank Accession CR405445 [GenBank]
Graphic View Graphic view of gene At4g22850
Predicted Position of Insertion Chr4:11996087 - go to primer design
BLAST e Value 3e-114
Hit Clone Code (BAC ID) T12H17
Hit Gene Code At4g22850 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SNARE associated Golgi protein family
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At1g23200

 
Sequence (A. th genome BLAST matches underlined) 
>38-K114415-0022-878-F05-8409
AATAATTTGTTTATTGCTTTCGCCTATGAATACGACGGATCATAATTTGTCGTTTTATCA
AAATGTACTTTCATTTTATAATAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAA
TTGGTAATTACTCTTTCTTTTTCTCCATATTGACCATCATACTCNTTGCGGATCCATGTA
NATTTCTCNGANNTGATNCCATTCTTGCTTGGCTGTTAGCTAANCCGGATTTCCCTTCCG
GGTCACTACGAGATTGANCGGTGATCGTGTTTTTCTGGCCGCTCATCNGCTTACGAGCGT
AGATGTTACAGTTTTGGAGGATGGCGGTTGCGTCTCCGAAAATGAAATCGACGGTTCCGT
AANTATTGCAGTTTCTCAAGAACTGACGACTA
GenBank Accession HE665030 [GenBank]
Graphic View Graphic view of gene At1g23200
Predicted Position of Insertion Chr1:8229312 - go to primer design
BLAST e Value 3e-66
Hit Clone Code (BAC ID) T26J12
Hit Gene Code At1g23200 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Plant invertase/pectin methylesterase inhibitor superfamily
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37