SimpleSearch - Line and FST details
Line specific information
| Line ID | 885D07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N484907) |
| Segregation Analysis | N/A (line seemingly not resistant, T2 plants grown without drug) |
| Confirmed for Hit | At1g08520 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g08520
| Sequence (A. th genome BLAST matches underlined) | >52-K028920-022-885-D07-8409 GCATCAGGGAAGGATGACGAGACAAAAGATAGAGAAGCAAAAGTAAGCTGATAAGGTTTG ATACAGTAGAAAATACTATCTCTTAACTTCTTCTTCTTCTTCTTCTTCTTCTCCTATCTT TGAAAATGGCGATGACTCCGGTCGCGTCATCATCTCCAGTTTCAACCTGCAGACTCTTTC GCTGCAATCTCCTCCCTGATCTCTTACCTAAGCCTCTGTTTCTCTCCCTCCCCAAACGAA ACAGAATTGCCTCGTGCCGCTTCACTGAATGGGATCCTCCCTATAGTGAGTC |
| GenBank Accession | CR935160 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:2696438 - go to primer design |
| BLAST e Value | 2e-82 |
| Hit Clone Code (BAC ID) | T27G7 |
| Hit Gene Code | At1g08520 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ALBINA 1 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR935161 [GenBank] |
Gene hit At1g72280
| Sequence (A. th genome BLAST matches underlined) | >52-K113778-0022-885-D07-8409 ATGGCGATGGCCTTTGCGACTTTGGTTGTCTTGTTTTTGGCACTTGCTGTCATCTTCTAA CCTGCCCGGCCGCTAAATNGAACNAGGCCGGCCGCTATAGGCCTTTCTTGCCCCTCCTCT ATCGCTATCTATATTCCCCCGCCCTCATGCCTTCTATACTTCTGTCATCATTGGTGTCTC CCTGCCTTCTTCACCTTGCTGCCCACCCACCCCGGCGCTATAACTTTTTAATACTGCCCC CCCTAGCCTCTCCCTGGCCAGCCCGATCCCTAGCAGTCGTTGTCTCTAGTGCTCCACCCT TAATGTGATTACTTAAACGAACCGGAACACCTGAACCGAAATTTGTATTTTGGGATTAGG CGTCGCCTTTGACTTCTTAAAGTCTTCTATTATTCGCTGTATCGTGTACGCCTTTACTTT CTTGCATCAGCCAACTGCTTTCTGATTCCCAACCCTCGCTCTTTACCTCATCCCGTCCGT TTTCGATTTGACCATAGTCTCTACGGACTCTTTTAATCGCGTCAGATGAGCGTTATCTAC GGTCATCATAATCTCTCATGAGCTCTCTGCGCCCCGTCCTGATCTCCGCGGCTATCCGCT CGACTACGTCTCCTCGCGGACCTCCCTATAGCGGCACTCCCCTTTTGCTGTCTCCAATCC TTCGTCTCGTTGTTATCTTCCAGTTCCCCTCGCCTTACTACCACGTGAGACCAACTGCCT GTCTGTCCTCCCCGCTCTGCGTTGACCACCCTCTATAGCTCCTTATCCATACTCTAGAGT GCCCGTGCCAAGATTACTGCTCTCCATATGCCGAACTTGTCATCCCTCCCTACAGGAAAC GACCCCCACCGCACATGTCTGACGCTGCTTCTCGCCTATCACGATTTTTATGTACCATCA CCCTCTATGTCTATCCTGCTTCACTTTCTTTAGCTTTTCCTTCTCCATTGTCGCCCCAGC CCTCTGCTCCTCCTGAGATACGTTTTCCTTTCTCTCTCCATTCTTCCCTCCTCTTGCCCC TTTCTCTTCCTACTCCTTTCCTTTCCCTACTTCTCCGCATCCCGTTACTCGCTTACTATA CTCGCCCTGTTCTCCACCGGTCCGGAGGCCTCGTTTCCATCAACCTGCGCACTCGGTTTT CCTCTTGCCATCGTTTGTTCTGATGCGGGCGCTTTCTCCTTCACCTCGGTCTTTCTGCTC TCTCCTCCTCTGTCTTCTTCC |
| GenBank Accession | HE665087 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:27214456 - go to primer design |
| BLAST e Value | 2e-10 |
| Hit Clone Code (BAC ID) | T9N14 |
| Hit Gene Code | At1g72280 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | endoplasmic reticulum oxidoreductins 1 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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