SimpleSearch - Line and FST details
Line specific information
| Line ID | 888H01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N485237) |
| Segregation Analysis | 50:49:25 |
| Confirmed for Hit | At1g10010 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5109, 5139, 5196, 5211, 5220, 7509, 76866 |
| Note |
Gene hit At5g23880
| Sequence (A. th genome BLAST matches underlined) | >08-K030272-022-888-H01-8409 ATATGTGAGTTATATATGCCGGTTCATATTACCCACTTGCTACGGAGATACACGGTTGGG TTAGTCTATGGTACCGGAACAGTAACCAGTCGAGAGGTTCCAGGAGATCGTAGTCTAAGA GATCTGTCCCACCTCAGTTCATGACGAATTTGAGACCCTCCCTGTAGAGAGACTACGAGA GAGGATTCTCGTTGTAAACTCCGCAGAGAGGAGTCACTTGCACCGAAGTATGGGATCCTC CCTATAGTGAG |
| GenBank Accession | CR935331 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:8052757 - go to primer design |
| BLAST e Value | 3e-22 |
| Hit Clone Code (BAC ID) | MRO11 |
| Hit Gene Code | At5g23880 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cleavage and polyadenylation specificity factor 100 |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At1g10010
| Sequence (A. th genome BLAST matches underlined) | >08-K113049-0022-888-H01-8409 CCATTTCATTGAATATATCCATATTCGGGGAACGAATGGTTTGATAACTAACCTGCCCGG CCGCTATTTCGCCAATNAGTACGACGGATCGTAATTTGTCGTTTTATCAAAAAGTACTTT CATTTTATAATAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTAC TCTTTCTTTTTCTCCATATTGACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGA CATGAAGCCATTTACAATTGAATATATCCATATTCGGGGAACGAATGGTTTGCTAGCTAA CATGCCCGGCCGCTAAAANNNNNNNNGNNGGNNNNTNNNCNCNNNCNTNNNNGNNNCTAA NNNGGNNNNNNTTGNGNNCGNCCNGATCGTTCTGAGCCCGCTTCCTGCTTCTCGCGGCTC TCTTTCCTTCCCTCNTCGCCGGGGTTCTGTCCTTCTCTTGTGCGTCTCTCGCAGTAGGTC TTTCCTGCCCGGCCGCTACGTCGTTTTTGTGGTCTGTTTGTGCTCTCCTGCTCTTCGTGT GGGCTTCTCCGTCTTTGTCCTTCTGCTCCGGCTTCGCCCCGCGGGTGTGTTCCTCTCCTT TGGCCGCGGCCGTGCTGTCGCTCGCCGTTGGCGTGGTTCCGGCGTCGTGTGCTTCGCCTT CTTTCTCTCTCTCTTTCGTGTTGTCGGGCCTTTCTGCCCTTTTTCGTTCTTTGTGCGTCG CGCGGTTGCTTTCCTCCTTGCTTGGGCCCCTTTTCCGCTGCGTGGTTTTGCGGCCCTTGT CGCCCGGCGTCTCGCCGGCGTCTTGCGCCCCTGCGCGCTCGTTGCTTTGTCTTGCTGGTG CGTGCCCCGCGGCTGTTCTCCTTGCCGTTTCGGCTCCCTTTCTCGTTCTCTCCCGGCCCG CGGGTTGCTCTGTTCTCTCCTCGTCTTCGCGCTTTGCCCCGGTCTGGCCGGCGTTCTCGC TTGCTGTGCCCCGTCTCGCCGTTTTTCCGTTCCGTTTCNCTGGCGCTGCTCCCGCCCGTG TCTTCTCTTTTTGCTGCCCGCTCGGCCGCCTGCGGCCCGTGCTTCTGTCTCGCTTTTCGC CTCGCGCGTTGTCCTCCTCTCCCTGCCTGTCGTGTCCTGTTGGTTCGCGTGGCGCCTGGC CTCCTGCCGTTGCTCTCGGGTGCCCCCCCCTCGCCTTGCTTGTCTCTTTCCTGCGCCGTT CCTTCCTGCCGTCGTGTGCGCTTCGCTGTCTGCCTGTGGCTTTTCGCCTTCTCGCGTTTT GTGCGTGTGGGGTTGGTTTG |
| GenBank Accession | FR817251 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:3266937 - go to primer design |
| BLAST e Value | 1e-04 |
| Hit Clone Code (BAC ID) | T27I1 |
| Hit Gene Code | At1g10010 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | amino acid permease 8 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR817252 [GenBank] FR817251 [GenBank] |
|
Last Updated on 10.06.2021 13:37 |
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