SimpleSearch - Line and FST details


Line specific information

 
Line ID 891C10
Vector Used pAC161
Line Availability available as T3 set from NASC (N485474)
Segregation Analysis 50:45:32
Confirmed for Hit At1g04170
Parent of DUPLO pair none
Parent of pair(s) 42732, 84521

Gene hit At1g16710

 
Sequence (A. th genome BLAST matches underlined) 
>75-K114617-0022-891-C10-8409
AAATCCCCAAATGAAAAAATTCAGACTTCTCTGATTTCGAGATATTTTGTCAATATTTCA
ATTTCCTCATCCCCTAACCTGCCCGGCCGCTAAAAATGGTAAGTACTCTTTCTTTTTTTC
AATATTGAAAANCNTNACNNNTTTNNTNNNNAANNNNNANTNTATNNTTAANNTNNNNNN
NTTNNNNNNNTNNNANNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNN
NNNTTNNNTNNNTGTNNNNNTTNTNTTTTTNNNNNNTNTTNNTNNTTNNNNNATANNTTT
TTNNNNTAAATTTNANTANTNNATATTTTTTATATAATATNATTTAATTNNTATTTNNTA
AATATTTATGNTGNTATATTAGATGTGAATTTTTTATAGGTTTAATTATAATTTTATAGT
TATATTGTNGTGTTGTGATTTATAAGAATATTTGTTGATGTTGTTTCTGGGTTATTTGGA
GATTATTTATAGGTGTAGATTTGTTCATGTATATAGGCGTATAGTCGATAGTTTTTATAT
GTATGCCGATAGATTTATTTCACGATTGTTAATAGAGTTTAACTATTGGTATTATGTTTG
TCTTATTTAATCTTTAGTGGTTTATATAGTTGTAATGTCGCATGTAATGGGATATGGGTG
TGGATATCGATTATTTTTCGTTTGTATGAATAGTGTATGGTTGTACGGGGTGGTGTTTGT
GGTGGTTAGGTTATGGTTAGTGTGATATATTGGTATTGGATACAGTTGTATAATAATAAT
TAGTTATGTCATTGATTGTCTGTATAGGTTTATTAGCGAGATGTAATAGTAGTATGAGTT
TTGGTGATTAGTGGAGGTGAGTATATCGGGTATCCTTGGCTGGTGGTTTTTGGATCTGGC
GTGTTCATGCTATTAAATATAGGTGA
GenBank Accession HE665384 [GenBank]
Graphic View Graphic view of gene At1g16710
Predicted Position of Insertion Chr1:5713990 - go to primer design
BLAST e Value 8e-16
Hit Clone Code (BAC ID) F19K19
Hit Gene Code At1g16710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation histone acetyltransferase of the CBP family 12
Insertion Classification Promoter
Confirmation Status unknown
Other FSTs Supporting this Hit HE665383 [GenBank]

Gene hit At1g04170

 
Sequence (A. th genome BLAST matches underlined) 
>22-K030275-022-891-F03-8409
CCATCCAAAGTGAAAAAGACATGCGGATCGCGAGCGATGTGTTATTTATAGTGAGTTTTG
TTTGTGTTACTGAAAAAAAGATTGTTAAACCCCTCAAAAAGATAATAAAACTCTTTTTCT
CGTTGGGGGATTTTGGAGAGTTCGTCTTTGCGGATTAAACATCTTCAAACAGTATGGGAT
CCTCCCTATAGTGAGACAAATTAA
GenBank Accession CR935468 [GenBank]
Graphic View Graphic view of gene At1g04170
Predicted Position of Insertion Chr1:1099699 - go to primer design
BLAST e Value 1e-46
Hit Clone Code (BAC ID) F20D22
Hit Gene Code At1g04170 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation eukaryotic translation initiation factor 2 gamma subunit
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR935467 [GenBank] CR935467 [GenBank]


Last Updated on 10.06.2021 13:37