SimpleSearch - Line and FST details
Line specific information
| Line ID | 897G01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N486089) |
| Segregation Analysis | 50:50:45 |
| Confirmed for Hit | At5g27100 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4304, 4462, 94159 |
Gene hit At4g31351
| Sequence (A. th genome BLAST matches underlined) | >07-K113888-0022-897-G01-8409 TGAACATTATCCAAATGTCAAACCTGCGCGGCCGCTATTCGCCTATAAATACGACGGATC GTAATTTGTCGTTTTATCAAAATGTACTTTCATTTTATAATAACGCTGCGGACATCTACT TTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCTCCATATTGACCATCATA CTCATTGCTGATCCATGTAGATTTCCCGGAAATGAAGCCATTTACAATTGAATATATCCT GAGGTACCATGAACATGATCCATATGTCTAACCTGCCCGGCCG |
| GenBank Accession | HE665486 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:15217421 - go to primer design |
| BLAST e Value | 0.033 |
| Hit Clone Code (BAC ID) | F8F16 |
| Hit Gene Code | At4g31351 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At4g31355
| Sequence (A. th genome BLAST matches underlined) | >07-K030261-022-897-G01-8409 NNTTTTGGCGATTTCCGCACATGAACCTTTACAATTGAATATATCCTGAGGTATGGGATC CTCCCTATAGTGAGTCGTATTATTCCCCCCATACTTGAGGTTCCCATAACCAATTCTTTA GACACAAGATTGGATTGGCTTATGTTTGGTGGAAGGAAGATGGTATGGGATCCTCCCTAT AGTGAGACTTATTCCTCGTTTGTTGATTTCTCTTCGCCTTACGCGCCATCAGGCGTATGT CTTGTCTTCCCTGTTAATTACTGTGTTTCATTAGTCGATATGTTATCCTTATTTAAGTTA AACTGATTTGTGGTCCTCATTATTATGTATGTTGGTGTAGCTCTTAATTTTTATATGTTT GGAAATA |
| GenBank Accession | CR935737 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:15219478 - go to primer design |
| BLAST e Value | 2e-23 |
| Hit Clone Code (BAC ID) | F8F16 |
| Hit Gene Code | At4g31355 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At4g02715
| Sequence (A. th genome BLAST matches underlined) | >07-K113889-0022-897-G01-8409 CACTATTTTATTCAGTGATACCTTTTTGTTTAAATGGATTGATTGTTTTCTCCCATAAAT ACGACGGACCGTACTTTGTCGAAATATCAAAATGTACTTTCATTTTATAATAACGCTGCG GACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCTCCATATT GACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACAATTG AATAAAACTACACTATTTTATTCAGTGATACTTTTTGTTTAAATGGATTGTTTTTTTTTT TCCCCCCGAATTCCCAACCCGCCCGGG |
| GenBank Accession | HE665487 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:1200796 - go to primer design |
| BLAST e Value | 1e-17 |
| Hit Clone Code (BAC ID) | T10P11 |
| Hit Gene Code | At4g02715 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | flocculation FLO11-like protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At5g27100
| Sequence (A. th genome BLAST matches underlined) | >07-K030279-022-897-G01-8409 GAAGCCATTTACAATTGAATATATCCTGAGGATAGGCGATCCACCCTACAGTTGATTCTA TATTATTCCTGCTCGATCTGTAGTATCATGGGATGAATGTAATCACACTCAGTGTTCTAA TGGTTTGGATCAGAGAGATGATGCTGTTGTGGCAGATACAACAATATCGTCAAATAGGTC AATGTATGTTGATTTCTCATTGCCATACACACCATCAGGCGTAGGTCTTGTCGTCCCTGT TAAAGACAGTGTTAGAAGAAGCAGTATGGGATCCTCCCTATAGTGAGACGNAATAC |
| GenBank Accession | CR935738 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:9536586 - go to primer design |
| BLAST e Value | 8e-69 |
| Hit Clone Code (BAC ID) | T21B4 |
| Hit Gene Code | At5g27100 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | glutamate receptor 2.1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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