SimpleSearch - Line and FST details
Line specific information
| Line ID | 900B12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N486328) |
| Segregation Analysis | 50:50:42 |
| Confirmed for Hit | At3g01320 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 94748, 94750 |
| Note |
Gene hit At5g15650
| Sequence (A. th genome BLAST matches underlined) | >90-K029995-022-900-B12-8409 AAAACCTACACCCCCACATTAGAGAACTGAGCGAATTACCAAATGTGCAAACATATTCTT ACTCACCAAGCCGATCTATGGATCTGGTGGGGGATCCTCCCTATACTGAGAATCCCCCNA CTCACCGGGCAAGCGCGCATCTGATCGCAAAGTATTTGAACGCAGGTATGGAATCCTCCC TATAGTGAGAG |
| GenBank Accession | FR817548 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5092963 - go to primer design |
| BLAST e Value | 6e-05 |
| Hit Clone Code (BAC ID) | F14F8 |
| Hit Gene Code | At5g15650 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | reversibly glycosylated polypeptide 2 |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit T10M13
| Sequence (A. th genome BLAST matches underlined) | >90-K030004-022-903-B12-8409 CCATTTACAACTGAATATATCCCGGTACATGTACTTATTCATATTATAAATGGCTTCAAG CCATGTAAATTGATATATTTTAAAAGAAAATTGCGTATGGGATCCTCCCTATAGTGAGAC GTATTACTCATGCCTAATTAGAATACCCCTCCCGACAACGCCGTTTTCTTTACCTTGAGA TTAAATACACATCCNATGACTTTGTTCAGGGGGGGCCAAGNTTTGANAANCTTTCAACCC CCGCTTTACCAGTGCAACAAGATTAGCGCACCCTATATCTATTTCATTTTGCTTTTAAAT AAATAACCTCATTTAA |
| GenBank Accession | CR935987 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:926095 - go to primer design |
| BLAST e Value | 4e-06 |
| Hit Clone Code (BAC ID) | T10M13 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At3g01320
| Sequence (A. th genome BLAST matches underlined) | >90-K112402w-0022-900-B12-8409 CTATCATCTTCGCATCTGAACAGCTCTCTTCATATTGGTTTCTGCGCATGTGCTTAAAAG AATAATCTTCACTTCCGGAAGTGACAGATACCCGTTGATCATTTAAAAGCTCAGCTCCTA AACTGCCCGGCCGCTAAAATCTACATTTATGAATTGAAAAAAAATTGGTAATTACTCTAT CTTTTTCTCCGCATACGACCATCAAACTCATTGCTGATCCATTGCTGATCCCTATTGAAT TTACAATTACTATCTTCTTCACATCTGAACAAGCTCTCTTCATATTGGTTTCTGCTCATG TGCTTATAACAATATTCTCTCACTTCCGGAAGTGACAGATAACAAATGATCATTTAAAAC CTCTGCTCCCAACATGCC |
| GenBank Accession | FR817549 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:109336 - go to primer design |
| BLAST e Value | 4e-50 |
| Hit Clone Code (BAC ID) | T22N4 |
| Hit Gene Code | At3g01320 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SIN3-like 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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