SimpleSearch - Line and FST details
Line specific information
| Line ID | 900E09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N486361) |
| Segregation Analysis | 50:50:20 |
| Confirmed for Hit | At5g10260 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1588, 4085, 4094, 8406, 8414 |
| Note |
Gene hit At5g10260
| Sequence (A. th genome BLAST matches underlined) | >69-K112402w-0022-900-E09-8409 GAATTGGGGAGCAACAACGAGGGTGGTTGTGCTTGTTTAATCAGTTTTAAATATATACAC AGCAGCAGAATAGGAAGATTTTTAAACGAAAGATTCATAATTTTATGGAACAAATAAATC CTGGTATGAGGAAAGGTGATTACACTATGGAGACCCTAACCTGCCCGGCCGCTAAAATTG ACCATCATACTCATTGCTGATCCATGTAGATTTCCCAGATAAAAAGCCATTTACAATTGA TTATATCAATGGGAATTGGGGAGAAACAACGAGGTGGTTGTGCTTATTAATAAGAAAAAC CTGTATCCACAAAAACAGAATAGGAAGATTTTTGTTCGAAAGATTCGTAATTTTATGGAA CAAGGGGGTCCTGGTATAAAAAAAGGTGATTACTCTTGTAGATCCCCCCCTGCCCGGCAA CAAAGAAGGGGGGAAAANNNTNGGGGGCCCCCCCGGGGGAATATTGGGCCCGCCCTTCGG GAACACGGAGGGGGGCAAAAAAAAAAGAGGGAAANTTCGGGGGGATTCNGGGGTGAACCG GGGCCCCAAAATTTTTTAAACCCTGCCTCCAAAAAAGACGAAACCCCCTTTCAAAAAACC CCCCAGGGCGCCAAAAAAAAAATCGCCGGGGAACTGAGAGATGACAATGAAAGACCCCTC AACCCGGCGCGCCAAAAAAANAACATNCAACCGCCACTTCCCCCGCGCGCCCGACGAGGA GGCTAATGTATTAGACGAATGCGCAGGCCCACATAACATATGGAG |
| GenBank Accession | FR817597 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:3221252 - go to primer design |
| BLAST e Value | 2e-64 |
| Hit Clone Code (BAC ID) | F18D22 |
| Hit Gene Code | At5g10260 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RAB GTPase homolog H1E |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR817597 [GenBank] |
Gene hit At4g28470
| Sequence (A. th genome BLAST matches underlined) | >69-K029995-022-900-E09-8409 GACATGAACCATTTACAATTGAATATATCCTGCCGCCGCTGCCGAGCAATGAGCAATGAT AGTTTAGATCGAAGGCGGGAAACGACAATCTGATCCCCGGGTATGGGATCCTCCCTATAG TGAGACCTATTGCTCATCTGACTTACAATGGCTCCTTTTCCGGATCCGAACAGTGTTGGC GGTGGTGCGAANCGGGACGAAGCTACGACGAAGAGGGGGGCGAAGGATTCCAAAAAGAAA GATGATAAAAAGGAAGAGGATCTGGTGAGTTTTCTTTATATCGATTTCGATTATTAGTTG GAATCGTGCTTANCTGAGTTAGAAAGAATCCNGGGAGATCGGAAAAAACTCACGATTAAG CTGTAGATTTTCCGAGATGTATGGGATCCTCCCTATAGTGAGAGGGNNNGGANNGCCCGA AAGGGGGAGAGGGGGGGGGGACAAGAAATCGACGTAAAATGAGGAGGCGGGACAAAGCGA GAGGAGGAGGATACGATGAAGAAAGAGAAGA |
| GenBank Accession | CR935833 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:14072465 - go to primer design |
| BLAST e Value | 5e-107 |
| Hit Clone Code (BAC ID) | F20O9 |
| Hit Gene Code | At4g28470 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | 26S proteasome regulatory subunit S2 1B |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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