SimpleSearch - Line and FST details
Line specific information
| Line ID | 915H05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N487833) |
| Segregation Analysis | 50:36:17 |
| Confirmed for Hit | At2g35100 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6783, 12049 |
| Note |
Gene hit MZN24
| Sequence (A. th genome BLAST matches underlined) | >40-K114401-0022-915-H05-8409 GACCCTCGCCACTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCTCCATAT TGACCATCATACTCATTGCTGATCCATGTATATTGCCTGTTGGTACGACACCTTAGCCTT CCAATCTTTCCGTCCGTATGTGACCATAAGTTTTTTACAATTTTACCAGTCCGATTGCTA TTTCCTGCGCCCATACGACAAATAATCACATTTACGCATGTTGACGCGTAACTATTACCC TGGCTACCCTGCCCGGCCGCTAATAANNCNTNGGTTGCCNGNNCGCGACTAATTNNTAAT AATCCAACACAGNAACGTTGCTNTCTCTGCGCCCCACGCGCGTGTCCTCCTCCTGTCTGT GGATGGTGAGTTTCATAGTGTCAACGGTTCGTACGACAGTCTGGCGGGACCGGTCACCAC ACACCCTAGCAAGATTGGCCTCATCGGTGTTAGGTATCTACCCATCTTCCGGACACGTAA ATACCAAGANGTGACCGGCGACTATTGCTTCCGAGTTTGGAAGAGTCTAGGCTGTTTGCG ACACAATATGACGGAGAGTAGCCAATACACGGCNTCCGACTAGGGNTAACGTAATGCGNG ACCTAGAAGCAGTTTATGTATATTGTAGGGAAAATTCNATTGTCCGCCTTGTNGGATCCA TATCTCCCGATCACCTATCACCATAAANGCTTCTGCTGGTACGTGGATCAGACAGGGTAG GTAATTGTATGTGTGNCTAGTTATAGTGANCTTAGGTTGTCGTTTACACTTGCNCGTCCA GCTGCGTTTGTCTTGGAGATGCGTTAGAAGATANGACTTATCTTTAGGCCTTCTAACTCG GCTCTACTATTTCTCTACTCGCCACCTAGTTACAGTTAAAACAATCTAGGCGCGTGTCTG ATACATTAGATNCTATCACTCGTATATACCAGATGCGTAACACACTCTTCTTCTGTTTAT CA |
| GenBank Accession | HE665913 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:7711780 - go to primer design |
| BLAST e Value | 3e-12 |
| Hit Clone Code (BAC ID) | MZN24 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At2g44890
| Sequence (A. th genome BLAST matches underlined) | >40-K031461-022-915-H05-8409 ATTGAATATATCCTGAGTATGGTATCCTCCCTATAGTGAGTCATATTACACCTTATATCT TTAAGACTTCATTAGAGTTTCCAAATTCTGAAATATTGAGTTTGGTCAGTTTCGAAGCGT ATGGGATCCTCCCTATAGTGAGACCTATTACTCCCTTTCTTTTTCATTCCCGCTGTCGGA CTTCTTTTTTTTCCCCTTTTTTTTGTTTTTTTTGTCTTCTTTTTTTTTTTCTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTGTTTTTTTGT TTTGGGTATCAGTAGGATGCGTAATTAATGTTGGAATAGTATATTGGAATTAGTA |
| GenBank Accession | CT027184 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:18509692 - go to primer design |
| BLAST e Value | 1e-15 |
| Hit Clone Code (BAC ID) | T13E15 |
| Hit Gene Code | At2g44890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cytochrome P450, family 704, subfamily A, polypeptide 1 |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
| Other FSTs Supporting this Hit | CT027183 [GenBank] |
Gene hit At2g35100
| Sequence (A. th genome BLAST matches underlined) | >40-K114403-0022-915-H05-8409 CCATCTTTCTCCATTGAAGAGATTGACTCTATGGGAGTAAGGTATTACAACATCCTTGAC GAACGATCCTTGATCAGGCCTCAACCGCCCGAAATCCGAAACCAGCAGAACTGCGTTTTT GACCCGATCCAAGATCCGATACAACGCATTCGGATCGCCTGCGGGTATCACGTGATCTCT CCCAGCATTCCTCCTCCACCACTCTTGACCTTCAAGCCACTCCACCAACCCTTCCTGCAT CTTCTCATCGCTGTAACCGGATCCAGCTTCAACGGGTCGACCCGCATTTACAATTAAGCT GAGTGAAGAGAACACAGGGACGTAGAAGAGATCAGCGTCGGCAGGATCCGAGACACGGAC AATCGGAGACCCGGATCGATCAACTTCGGGTTGATTAAGATCCGAGAAAAGATACCACTC GTGCATATGTTGATGACCCGGATACTTAAGCGTGGTGACGTCACCGACGGGCTTCTTGAT TCCGCCGCGAGCGATTGAGTGCTGCTCGATTAAACCGTAAGTGAATCTCTTGGGGAGATT GTACATGTAAACCCTAACCCTAACCTGCCCGGCCGC |
| GenBank Accession | HE665914 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:14794642 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T4C15 |
| Hit Gene Code | At2g35100 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Exostosin family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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