SimpleSearch - Line and FST details


Line specific information

 
Line ID 919C07
Vector Used pAC161
Line Availability available as T3 set from NASC (N488159)
Segregation Analysis 50:48:47
Confirmed for Hit At5g04347
Parent of DUPLO pair none
Parent of pair(s) 43265, 84781

Gene hit At3g51171

 
Sequence (A. th genome BLAST matches underlined) 
>51-K030992-022-919-C07-8409
AGCCATTTACATTGAATATATCCTGCATACAGATCTCAATGGAAAGCGGATATAGGGCCT
AGGTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACGGTTTTTTTGATAATCGATTA
AGGAGAACCTTGCGCCCCACCCGGTGAGCGACGGGGCAACGGAGTGATCCTCATGGGACT
TTTAAACATCATCCGTCGGATGGCGTTGCGAGAGAAGCAGTCGATCCGTGAGATCAGCCG
ACGCACCGGGCAGGCGCGCAACACGATCGCGAAGTATTTGAACGCAGGTATGGGATCCTC
CCTATAGTGAGTCGTATTACTCAACCGGATTGGCACCCAAAATGCCCAAAAAAATAACAG
AACATGTGACTAAAGCTTTGACAAACGGATGAAATCTAGGCTCTACGACCACTACAATGA
TATAATATATGTATGGGATCCTCCCTATAGTGAGTCGAATTACTC
GenBank Accession CT027415 [GenBank]
Graphic View Graphic view of gene At3g51171
Predicted Position of Insertion Chr3:19011826 - go to primer design
BLAST e Value 4e-37
Hit Clone Code (BAC ID) F24M12
Hit Gene Code At3g51171 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation F-box and associated interaction domains-containing protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At5g04347

 
Sequence (A. th genome BLAST matches underlined) 
>51-K030991-022-919-C07-8409
CCCCCAAATCGAAAGATCCTGCATACAGAGCTCAATGGAAAGCGGATATTGGGCCTAGGT
ATGGGATCCTCCCTATAGTGAGTCGTATTACTCACTTTTCTTTTGAGATACCGCTGCTGA
GATCCTTCCCCCCCACACGGTGAGCGACGGGGCAACGGAGTGATCCTCATGGGACTTTTA
AACATCATCCGTCGGATGGCGTTGCGGGAGAAGCANTCGATCCGTGAGATCANCCGACGC
ACCGGGCAGGCGCGCAACACGATCGCAAAGTATTTGAACGCAGGTATGGNATCCTCCCTA
TAGTGAGTCCTATTNNTCN
GenBank Accession CT027414 [GenBank]
Graphic View Graphic view of gene At5g04347
Predicted Position of Insertion Chr5:1220140 - go to primer design
BLAST e Value 1e-12
Hit Clone Code (BAC ID) T19N18
Hit Gene Code At5g04347 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Plant self-incompatibility protein S1 family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37