SimpleSearch - Line and FST details


Line specific information

 
Line ID 925C04
Vector Used pAC161
Line Availability available as T3 set from NASC (N488732)
Segregation Analysis 50:42:27
Confirmed for Hit At1g52830
Parent of DUPLO pair 6839
Parent of pair(s) none

Gene hit At1g52830

 
Sequence (A. th genome BLAST matches underlined) 
>27-K113658-0022-925-C04-8409
GATTTCCGAATTATAAAAATTTGTTTACTGCTTTGGCCCTAAAATACGACGGATCGTAAT
TTGTCGTTTTATCAAAATGTACTTTCATTTTATAATAACGCTGCGGACATCTACATTTTT
GAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCTCCATATTGACCATCATACTCAT
TGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCATGCAA
CTGGTTTTGGTCTCCAGCAAGATTAATCATACTAACCTGCCCGACCG
GenBank Accession HE665956 [GenBank]
Graphic View Graphic view of gene At1g52830
Predicted Position of Insertion Chr1:19672947 - go to primer design
BLAST e Value 2e-13
Hit Clone Code (BAC ID) F14G24
Hit Gene Code At1g52830 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation indole-3-acetic acid 6
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g33051

 
Sequence (A. th genome BLAST matches underlined) 
>27-K113657-0022-925-C04-8409
GACGGTACGTAATTTGATCTTTTTGCGAAATGTACTTTGGTTTTATAATAACGCTGCGGA
CATCTACTTTTTTGAATTGAAAAAAAATTGGTAATTACTGCTTTCTTTTTCTCCTTATTG
ACCATTAGATACATTGCCGATCCCTGTACATTTCCCGGACATGATCCCTTTTACCATAGA
TCATCATTCGCCCCATATTAAACGTTTTGTCTCTTGCCTATAATCTGTCCGGCCGCTAAG
GGTAACCAGCCCGGCCACTAAATAGGANTCCNGTGTGATAACACGACTGGTGCGGTCACG
AAGCTTCAGCTCCCATATGGTTGCTTCTCTGGAACTCTCACACCCACCTGTACTTTCTTT
GAGTTGCATCGTCTTCTTTACCTTAATCTCTCTCACAACAACTTCACTTCCTCTTCTATC
CCTTCTGAGTTCGGCGATCTCACCAGATTAGAGGTTTTGTCTCTTGCCTCTAATCTGCCC
GGCCGCTAGAAAATACTCTTCTGTTTTCTTCATCGATCTCTGAGTAGGTGGTAATCCGCC
ATCCTGCCACCCAACC
GenBank Accession HE665955 [GenBank]
Graphic View Graphic view of gene At2g33051
Predicted Position of Insertion Chr2:14021718 - go to primer design
BLAST e Value 1e-69
Hit Clone Code (BAC ID) F25I18
Hit Gene Code At2g33051 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Natural antisense transcript overlaps with AT2G33050
Insertion Classification TS2TE
Confirmation Status unknown


Last Updated on 10.06.2021 13:37