SimpleSearch - Line and FST details


Line specific information

 
Line ID 934D03
Vector Used pAC161
Line Availability available as T3 set from NASC (N489607)
Segregation Analysis 50:41:21
Confirmed for Hit At4g39270 At4g39280
Parent of DUPLO pair 2714
Parent of pair(s) none

Gene hit At4g39270

 
Sequence (A. th genome BLAST matches underlined) 
>20-K032035-022-934-D03-8409
TGATCCGGAATGAGCATTTACAATTGAATATATCCTGGCGGAAGAGGCGATACTAGGGTT
CCTTCAGAACAATGAACAGATCACTGATTCGGGTCAATTCTCTGCCGAGTTCAACATCGA
CCACAACGAACTCGTCAATGTCATCAAAAGTCTCCATGGTTTTCGTTACATCGATGTTCA
GGTATGGGATCCTCCCTATAGTGAGTCGCATTACTGCACTTTGTTTTATTCAAAACAGGG
CTTAACTTTCAACAATTTCGGACAACATGAAGAGAAGAAGAGTTCTAAAACTTCCTGGTT
AAGCCACACGAAAATAGTTATACTTGCTGCAGTTGGAGGGTCTATATTGCTTATGCTCAT
TCTCATAGTGTTACCAATAACAGTGAGTTTCTGTGTCCGTCGAAGAAACAGATCATCAAC
AAGTAATCATCCTAGAGGAAGACACAACGGTGTTGGCCCATTACCTCCTGATGAAACACT
TCCCTCAAGAGGAGGAGTCTCTATAAACTTTGGGAGTCTTGGATCATCATTTACCTATCA
GCAGTTGCTCAATGCCACCAAGGAGTTCAGTGATTCAAACCTGATCAAGAAAGGACAATC
TGGGGATCTTTTCAAGGGAGTTCTAGAAAAC
GenBank Accession CT955124 [GenBank]
Graphic View Graphic view of gene At4g39270
Predicted Position of Insertion Chr4:18277867 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T22F8
Hit Gene Code At4g39270 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g39280

 
Sequence (A. th genome BLAST matches underlined) 
>20-K031923-022-934-D03-8409
TATCCGGATGAGCCATTTACATTGAATATATCCTGGCGGAAGAGGCGATACTAGGGTTCC
TTCAGAACAATGAACAGATCACTGATTCGGGTCAATTCTCTGCCGAGTTCAACATCGACC
ACAACGAACTCGTCAATGTCATCAAAAGTCTCCATGGTTTTCGTTACATCGATGTTCAGG
TATGGGATCCTCCCTATAGTGAGA
GenBank Accession CT955123 [GenBank]
Graphic View Graphic view of gene At4g39280
Predicted Position of Insertion Chr4:18284830 - go to primer design
BLAST e Value 1e-78
Hit Clone Code (BAC ID) T22F8
Hit Gene Code At4g39280 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37