SimpleSearch - Line and FST details


Line specific information

 
Line ID 938D07
Vector Used pAC161
Line Availability available as T3 set from NASC (N489995)
Segregation Analysis 50:34:31
Confirmed for Hit At4g32800
Parent of DUPLO pair 11763
Parent of pair(s) none

Gene hit MMB12

 
Sequence (A. th genome BLAST matches underlined) 
>52-K112796-0022-938-D07-8409
CATTTCATTGAATATATCCTGTCAATTGAATACAAAAATAGAATGTAACGTTGACTAACC
TGCCCGGCCGCTATNANTACAACGGANCGTAATTTGTCGTTTTATCAAAATGTACTTTCA
TTTTATAATAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTC
TTTCTTTTTCTCCGGATAGACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACA
TGAAGCCATTTACAATTGAATATGTCCTGTCAATTGAATACAAACAATAGAATGTAACGT
TGACTA
GenBank Accession FR818173 [GenBank]
Graphic View Graphic view of sequence FR818173 of line 938D07
Predicted Position of Insertion Chr3:6843292 - go to primer design
BLAST e Value 2e-06
Hit Clone Code (BAC ID) MMB12
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g32800

 
Sequence (A. th genome BLAST matches underlined) 
>52-K112795-0022-938-D07-8409
AGATCGTCGGAGACTNTACTTTCCTCATGCTCGTAACAGAGAGACTCGTTTCGTTACTCT
CACTACTCTCTGACATTTTATTCGACGTCGATCGTTTCGCTAACCTGCCCGGCCGCTAAC
TTTCATTTTAAAATAACGCTGCGGACATCTACTTTTTTGAATTGAAAAAAAATTGGTAAT
TACTCATATCTTTTTCTCCTTATGGACCATCAAACTCATTGCTGATCCATGTATATTTCC
CGGACATGAAAATCGTCGGATACTGTACTTTCCTCTTTGTTCGTAACTGAGAGACTCGTT
TCGTTACTCTCGCTACTCTCTAACATTTTATTCAACGTCGTCTTTTCGCTCACCTG
GenBank Accession FR818172 [GenBank]
Graphic View Graphic view of gene At4g32800
Predicted Position of Insertion Chr4:15820220 - go to primer design
BLAST e Value 3e-18
Hit Clone Code (BAC ID) T16I18
Hit Gene Code At4g32800 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Integrase-type DNA-binding superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37