SimpleSearch - Line and FST details
Line specific information
| Line ID | 942E05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N490389) |
| Segregation Analysis | 50:37:33 |
| Confirmed for Hit | At1g52660 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12745 |
Gene hit At1g52660
| Sequence (A. th genome BLAST matches underlined) | >37-K032877-022-942-E05-8409 GCAGATATCTCGGAAGAAGCCATTTACACTGCTGAAGCTTTAAACCGAAGGCGGGAAACG ACAATCTGATCCCCGGAGTAGGGATCCTCCCTATAGTGAGACTTATTGTTCACTGTGAAT GCTGGAGTTCCGCCACCGGATGCGCAAAACCGGTCGAAGATAGTGTTCACGACATGTTCC GAAGAAGTTTGTAAGGACATGACTGCACATACGAATATCAGAGTAGAGAAATTGGCATGG GAACGATCTTGGGACTTGTTTAAGAACAATGTTGGAGAAGATACTATAAAGAGCCACCCA GACATAGCCAAAGTGGCTCAAGAGGTTGCAGCCAGGTGCGACGGTCTTCCTCTAGCTTTG GTCACCATTGGCCGAGCCATGGCCTCCAAGAAAACCCCTCAAGAATGGCGTGACGCCTTG TATGGGATCCTCCCTATAGTGAGACCAATTGATCCCTACGCCTTAAATGCCACACTGCAG GAAACAGAAGAAAAGAGCGCCTACCGATAAACCGAAAGCAAAAGAACAAAACTAAAGCAA CCAAAGGAACGGAACAAAGACACGACCCCAAAAACGCATTGGGATAGAAAGAAAACGAAA AACAGA |
| GenBank Accession | CT955263 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:19614259 - go to primer design |
| BLAST e Value | 6e-150 |
| Hit Clone Code (BAC ID) | F6D8 |
| Hit Gene Code | At1g52660 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g18020
| Sequence (A. th genome BLAST matches underlined) | >37-K032904-022-942-E05-8409 GATATTCTAAACCGAAGGCGGGAAGCGACAGTCTGATCCCCGAGTATGGCTACTTCCAAA TAGGAAGACAAATGTTGGCTCATCATCGTTGGAACCCAGAAGTCACATTGATGAATGTAT CTTCAGGACAGGGGATCGTTAAGCCACCCATTGGATGATCGAATCCAAACTCTTCCTCGG ATTTACTGAGAAGAGCTTGAAATGAAGGCTGGTTTAAATATGAGATTGACACCAAATATC TCTTCTTTTGGCTCTCACCTACGTATGAGGATCTTCCCAATAGTGAAACCAGTCTCACTT GCATCCCAAATATTATATCAACAATCTAAAGAAACCATAATATAACTAAAACTCGCCCGT AAACCAGATTATAAAGAAACCAATCAGATTGACTAATATAACATATCCACAATACAAAAA CATAAAACAATAACCAAAACTCACCAATAAAAATACAAATACAAAAAAAGCAAGACGTAT AACTTACAAGACTACATCCATTAAGATCATAACCACAATGATCGAACAGCTATTAAATAC ACTATACAATAGTAAACGCAAAA |
| GenBank Accession | CT955264 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5966247 - go to primer design |
| BLAST e Value | 8e-103 |
| Hit Clone Code (BAC ID) | MCM23 |
| Hit Gene Code | At5g18020 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SAUR-like auxin-responsive protein family |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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