SimpleSearch - Line and FST details


Line specific information

 
Line ID 943B09
Vector Used pAC161
Line Availability available as T3 set from NASC (N490453)
Segregation Analysis 50:48:35
Confirmed for Hit At2g34820
Parent of DUPLO pair 11795
Parent of pair(s) 1561
Note

Gene hit At3g06910

 
Sequence (A. th genome BLAST matches underlined) 
>66-K032905-022-943-B09-8409
GTGAGCCACTAGATTTCCCGGACATGATGTCACACCCTGATAGTTTATTCCGAAGGCGGG
AAACGACAATCTGATCCCCGGGTATGGGATCCTCCCTATAGTGAGTCGGATTANTCTTTN
CTTATTTATNNGCCGCTAGAGAAGATCGCGGCGGGGTTTGGGGGGGGGGGGGGAAGAATG
AGTTACCCAAAATAAAAGTCAATCACAAAACACGCGACAGATAAACAAGAGAGCAAGAAT
CAAAAATCTAGCAAGAATGCAAATACTTTCTCCTCCACGTCACATAACCCCTCAAAGAAT
GAACTAAGGAATCAAACTGAAGATAACTGACCCAAATGATACTTCATAAAACTATGACAT
ATCACTACCAACAAGAATCCATAAACACTACAACAAGTAAATACACATAATCACAACCCT
AGAAATCGAGCCA
GenBank Accession FR818351 [GenBank]
Graphic View Graphic view of gene At3g06910
Predicted Position of Insertion Chr3:2179958 - go to primer design
BLAST e Value 3e-04
Hit Clone Code (BAC ID) F17A9
Hit Gene Code At3g06910 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation UB-like protease 1A
Insertion Classification CDSi
Confirmation Status failed

Gene hit At2g34820

 
Sequence (A. th genome BLAST matches underlined) 
>66-K032856-022-943-B09-8409
GAAGCCATTTACAATTGAATATATCCTGCGCTAACGCGTTCGGATGCTAGTGAGCCACTA
CGATTTACAGGTTCAAGTTGTCACGACCAGATTCTTATATTGGGGTTGCTGGAAACCACC
ATCTGATCCCCGGGTATGGGATCCTCCCTATAATGAGTCGGATTAATCTTTACTTATTTA
GCGGCGCCTTGGAGCATCTCGGCGGTGTTAAGTTTATTGCCACCGGGGATGACTTTTCCG
AGCTCGTGAGTCTTCTCTGCAATTCTTCTTCTCCTCCCTCTAGCCGCGATGCTCTGAGAT
GAAAGCGTCGGTTTCTTTGANTCATCTTGATCTCCCCGGCCTACCTTGAAAGCTAAAGAG
AAATCCGGAACTCGAAACTCCTGGAAGGTATGGGATCCTCCCTATAGTGAGA
GenBank Accession CT955315 [GenBank]
Graphic View Graphic view of gene At2g34820
Predicted Position of Insertion Chr2:14690404 - go to primer design
BLAST e Value 4e-108
Hit Clone Code (BAC ID) F19I3
Hit Gene Code At2g34820 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37