SimpleSearch - Line and FST details
Line specific information
| Line ID | 950F08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N491172) |
| Segregation Analysis | 50:50:48 |
| Confirmed for Hit | At4g27690 |
| Parent of DUPLO pair | 2124 |
| Parent of pair(s) | none |
Gene hit At5g59630
| Sequence (A. th genome BLAST matches underlined) | >62-K114158-0022-950-F08-8409 TGGTATTAAAGCTATACCAGCCATTGATCAACAAGCCGAACCTGCCCGGCCGCTAAAATA CGACGGATCGTAATTTGTCGTTTTATCAAAATGTACTTTCATTTTATAATAACGCTGCGG ACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCTCCATATTG ACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACATGTAG ATTGTTTATTGGTATTAAAGCTATCCAAGCCATTGTCATCAAGCCTAACCTGCCCGG |
| GenBank Accession | HE666775 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:24023309 - go to primer design |
| BLAST e Value | 4e-08 |
| Hit Clone Code (BAC ID) | MTH12 |
| Hit Gene Code | At5g59630 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At4g27690
| Sequence (A. th genome BLAST matches underlined) | >62-K105093-0022-950-F08-8409 TGGGATCCTCCCTATAGTGAGTTATAATACCCTCTGCGATGATTTATCTTTATGATAGGA TTGGCGTGTTGGTCTATATAAAATAAATAGATTGGAACTAATAGACCTAAAACTCAAGCA ATTTATAGGCTCTTGCTATGGGATCCTCCCTATAGTGAGANGTGGTCANATATTCACTAT GGGATCCTCAAAAGCGTGAGACGCACGCGACGGAGGAGCCAAAAGTGAATCGGAGCAAAG AGGAGAAAAAAAAGAAAAAGCAGAGGAATAAGAAATACGCAGAAAACCAAAAAGAAACGG AATACAAGGGCAAAAAATCATAAGAAGAAGAGGAAAAGAAAATAGTAAAAAAAAAAACGA AAACAGGGAAGAAATAAACGAAGAACAAACGAAAGCGGAAATATAACAAGGAGGGCAGAT AAACAGACCGGAAACAGGGAGTGAGGAAAAAGAAAAACGAAAAGAGAAGCCAGGAATATT AATTAAAGGGAGAAACAAAACATACGAAACCCGAAATAATAACAAGTAAAGCCACGGAGG CCGAGAACGAGGAGAGGCCGAGAAACAACGGAGCAGATAAAAGGAAAAAGAGAACTGCCT GCGCAACAAGTAAAGGGTAAAACGAAAAGACTCAGGACGAAGAACAACAGATGGGAAGAA GAAACAAGAAAGACAATGTAGAAAGAAAAATAACCGAAAAAATATAGACTAAGAAACAAT GAACAAAGAACGCAATAAAGAAGAGCCAAGAGCAAGGGCTAAGGAGAGGCGCGGAGAAAA GGAAAGGTACAGACAAAGAACACAGAACGAAGCAAAAGAAGAGATTATAAAAGAACTAAA ACGCGCGCGACAACGATGAAAATGACCGGGACCAAGCAACAGAAACAAAACACGACACAA CGCAAATATACGCAGAAACATAGAACAGAGAGATAAAGAGACACGCGCGAACTGGGAAGA CGAGAAATAAACAGGACAACAGAGAAGTGACAAAGCAGGACAAAAGTTATACATACACAG CAAATCGCAGGACAAGCCGCCCGAAACAGAATAAATAACATACAGTACAAGCAAAAAGAC ATAGAGCGGCCGAGCAACGCCGGAAGGAGAAGCGCGCAAGAGAAAAGAGACGTAAGGAAG CGAGAGAAAGAAGGAACGGGGGAAGTGCAAATTATATATAAGTAATACCAACGAGCACGG AGAACACAGACGCATGAAGCCGAACAATACTAATGTAGTGATAACGGAGGAACGAAATGA CATATGTACGGTCACAGCGTAAGAAACTGACACCACGATAAAATAAAACAAAAAAACTCC GCACAGAACGACGTTCAACGCATAAATGTAAACCCACCCT |
| GenBank Accession | FR818522 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:13825317 - go to primer design |
| BLAST e Value | 2e-16 |
| Hit Clone Code (BAC ID) | T29A15 |
| Hit Gene Code | At4g27690 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | vacuolar protein sorting 26B |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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