SimpleSearch - Line and FST details
Line specific information
| Line ID | 953E06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N491446) |
| Segregation Analysis | 50:49:49 |
| Confirmed for Hit | At5g02960 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 11988 |
Gene hit At5g02960
| Sequence (A. th genome BLAST matches underlined) | >45-K102152-0022-953-E06-8409 ATGAATGAAACTAATCCATAGTGTGATGATTGAATAGTCATTTCATGTGACTTACGTTTT CCTCGATGTAGTTCAAACAACCATCATTGGGGACAAAGGCAGCAATCTTCTTTCCATTCT TGATAAGCGGAACTCTATGGGATCCTCCCTATAGGGAGACGTGGGAGGGCGGCCGGGGAG AGGGGGACTGAAAGGGTTAGGAATTTAGAGGTGGAGAACAGAAGAAAGGAAGACCAGGAG GAGTAACTAGGAGTGAGCAAAGAGAGAGAAGTAGAGACATAAGGTAAAGAAACGGGGAAA AGGAAAAAAGAAGTAAAGAGGGTGATAGGAGGGAATAGAGGGGATAAGAGAGAGGAAGAG GGGGAGGGAGGGAATAAGGAAGTTAGGTGGGGGGAGGGGAGGGAAGGAAGAAAAGTTGAC GAGATAGGGGAAGGTTGAGAGGGGGAGAGAAAATCATTGTGGGAAAAGGGATGTGATAAA AAAGCGGCTAGGAGGATCCGAAAGGAGAGAGTAGAAGGTAAAGGAGTGGGGGCAGGAGTA GAAGATGGCGAGAGAGGGAATGAAGTAGTAGAAGAAGGAGAGAGGTAAAAGATAAAGAAG GGTAAGAGGAAGAGAACAGTAAGGAAAGGATTGGAGAAAAAGAAGTAGAAGGAGGGGAGG GGAGATGGTAGGAGGCGTGGGAAATCAGGGGGGAGGGGAGGACGCATAAAGGGAGGGACA AGAAGGAGAGGAGATAGAGTAATAAGTACGTGAGAAGAGGAAGACAGGATAAGAAGAAAT GAGACACGAGATGGTGAAAAAGTAGAGTATATGAATGAGGGAGGGAAGTAGTAGGGGAGG AACGGAAGAAAGGAATAAAAGAAAGGGAGACGAAAGGAGAGGATGAGATGACGAAAATCG AAGAAAGTGTTGGCAGGGGAAAGCGGAACCGGTAAAAAAGCGTGGGGATAAGATAGAAAT CGGGGGAGAAGTTGAAAGACGAGAAGAGGATACAAAAGGAGAGAATAGGAGGTAGGGACA GATTACATAAGAGGGGAGTAGAGATAAGTAGAGAGTTAAGCGAAAGAAGTAGTGCAATAA TCAGTAAAGTGAAGAGGAGCGAGAGAAGAGAGAGTAAGAGGTCACAAAAAGAGCGAAGTA TGTGAGAAACAAGAATGTTAAGGGGAGGGTGACGGAAGGCGCGGGTGTAGAGAGACGGGA GAGAGGCAAGAATAGAAAGGGGCGTACGCGAAGGAATAGAGAGCGAGCATAGAGTAGTGG AGAAAGGTGGGATTGGGTATGGATATCAAGGATGAATAGAGCGACGCCATATGGATGAGG GAGTATATGAGTTAGAGGATGGGCAGGAAGTGGTAGGAAGGAGAGAAGAAGATGG |
| GenBank Accession | CU458350 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:693414 - go to primer design |
| BLAST e Value | 6e-69 |
| Hit Clone Code (BAC ID) | F9G14 |
| Hit Gene Code | At5g02960 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribosomal protein S12/S23 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g23212
| Sequence (A. th genome BLAST matches underlined) | >45-K105091-0022-953-E06-8409 GAAGCATTTACATTGAATAATCTATATGCATATAGGTTGGAGCCTATGGGATCCTCCCTA TAGTGAGTCGTATTACTCACCGCCCTAGGGGGTCCTCCCAACACTGAGTCCTAT |
| GenBank Accession | FR818693 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:7815764 - go to primer design |
| BLAST e Value | 6e-04 |
| Hit Clone Code (BAC ID) | MKD15 |
| Hit Gene Code | At5g23212 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Defensin-like (DEFL) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At3g15690
| Sequence (A. th genome BLAST matches underlined) | >45-K113891-0022-953-E06-8409 AATCATATATGCCTATATGTTGGAGCCTAACCTGCCCGGCCGCTATATCGCTTCCGCCCA TCACTCCACGCGATTATATTACCGTCTCCTAAGATCATCAACTTCCCATGCTGCAACTTC CTTCGAGAACCACTCATTTCTTACTTACAACACAACCGCTAATGCCTCCTGTCCCTCTCA CAAATCGACATCATCATCATTGGCCGCATCATGTCTCTCTTTTCCAATACGAAGCTGCCC AGCCGCTAAAATACAAACACGCCTACAGGTTGGAGCCTAAACTGCCCGGAAGCTATAAAA TTTTGGGGGTGTGTTTGTAAAATATTTGTTTATTATTGCAGACACTGGTCACTAACCAGC CCGGCCGCTATGTGCACAACCACTCAAACCTTATATAATCCCCGCTTCTGCTGCGTCAGG CACCTCACAACATTTTTCATCTATATTTGAACTCCACATCATCGTCTTTTTCTTACCAAC GCATCTGCTCCGGCTGCTATAAATGCTTAAGGTATGATGCTCATGTCCTGGATCCACTAA CCTGCCCGGCCG |
| GenBank Accession | HE666943 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:5316943 - go to primer design |
| BLAST e Value | 6e-16 |
| Hit Clone Code (BAC ID) | MSJ11 |
| Hit Gene Code | At3g15690 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Single hybrid motif superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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