SimpleSearch - Line and FST details
Line specific information
| Line ID | 960B07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N492083) |
| Segregation Analysis | 50:44:34 |
| Confirmed for Hit | At5g04120 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1785 |
Gene hit At5g04120
| Sequence (A. th genome BLAST matches underlined) | >50-K113868-0022-960-B07-8409 ATTTTTGTATGATGGTTGGTATATTGACGACCAAACTCTAAAGAATTGTTTGACGTTCTC TGAAATAACCTGCACGGACGCTAATTTGTCGTTTTATCAAAATGTACTTTCATTTTATAA TAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTT TCTCCAAATTGACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCA TTTACCAAATATTTTTGTATGTGGTTGGTATATGGACGATAAAACAATAAACATTTTTAA GACTGTCTTGGATTCACCCTGCCCG |
| GenBank Accession | HE667082 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:1120533 - go to primer design |
| BLAST e Value | 4e-16 |
| Hit Clone Code (BAC ID) | F21E1 |
| Hit Gene Code | At5g04120 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Phosphoglycerate mutase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit F5O11
| Sequence (A. th genome BLAST matches underlined) | >50-K105035-0022-960-B07-8409 GTTGCAGTCTTAAGTTCTGATATCAATTTTTGGTTTGTTCAGGTTTTCAAAGNNTACACA ATTTANAANCCGTATTGAAAATCAAATCCAGTTTCATCTATGGGATCCTCCCTATAGTGA GGNNNNNNNNNNNNAGNNNAGAGANGAGGCGGAAAAAAGGATAGAAAGAGATGGTAGAGA GGGAAAATAACAAGGAAAGAATAAGAAAAAGAAAAAAAAAAGAAAACAAAAATGAGCAGT AGAAGAACGAGAAAAAAAAAGAAAAGAAAAAAAAAAAAGAACAAGACGAAAATTAAAAAA GAAGAAAATAGAATAAAAAAAGGAGGACAAGGAAAAAAGATACAAGAAAAAAAGAAAAAC AAAGAAAGAAAGAAAAAAAAGAAAGAAAGAGAAAAAAAATAAAGAAAGAAGAAAAGAATA AAAAAAAAATGAAGACACGAGAAAAGAATACAAAAAAAAAAGAAACAGGAAGGAAAAAAA GAATAAAGTATAAACAGAAAAAGAGAGAACGAAGATATAAGAAGAAGAACAAAAAAAAGA AAAAGCAAGAAAAAGGCAAGAAGGAAAAGAACCACCGAGACAAAAAAGAAAACGAAAAAA GAAACAAAAAAAAGGAAGAAACAGAAAAAAATGTAAAACCGGAAAGACAAAAGCAGCAAA GCGAAGTGATAGGAATACAAAAAAGTAATAAAAAAATAAAAAAAAAACACAAGAGGAAAA AAAAGAAAAAATTAGAGAAAGAAAAAAACAATAGAAAAAATAAAAAAATAGAAACGGAAA AAAAAATAAAAGTATAAAACAACAAAAAAAAAGAAAAAAATAAAAAAACAACGAGAGGGA GGAGAGATAAAAAAATAATAAAATAAAACAAGAGCAAAAAAAAGAAAGAGAGAAGAAGAG CGAGCTAATAAAGCAAAATAAAATAAAATAAAAAATAAGAAAAAAAAAAGATAATAACAA AAAACAAAAAAAAACACAAAAAGAGGGAAATAACGAAAACAAAAGTAAAAGACAAAACAA AAAAAGAATAACAGAGATAGAAGAAAGCAAGAATAGAGAGGATAAAAAAAAGAACAGAAG AAATAGAAAGAGAAAAACAGTAAGTAAATAAAACAGACAGCGACAGAAAAATAATGTAAA AAAAAAACAAAAAGGAGAAAGAAGAGGAAAGAAATAAAAACAAGAAAGAAGAAGAAAGAT GACAGGAAAATAAAATAAAATAAGACAAGACAAATAGTAAAAGAGTAGGAGCAAGGGAAG AAGTAAAGAAAGACAATAAAAAACGTAATACAAAATATAGAAGATACAATAATAGAGAAA GAAAGAAGTGATGAAATATAAGACGAAAGAATGATAAAATATGATAGAAGCAAAAGTCAG AGAAACAATAAGTAAGGTATGAAAGAGAGAGAAGAATTGAAAGACAAGAAAATGGACAAG TAATAAAACGGAAAGGCGATAGACAAATTAAAAAGAAATAATAAGAAGAAGACACATGAG TAAGTC |
| GenBank Accession | FR818994 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:4240470 - go to primer design |
| BLAST e Value | 1e-23 |
| Hit Clone Code (BAC ID) | F5O11 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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