SimpleSearch - Line and FST details
Line specific information
| Line ID | 964A01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N492449) |
| Segregation Analysis | 50:50:49 |
| Confirmed for Hit | At5g44770 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 91548, 91554, 91561, 91570, 91575, 91576 |
Gene hit At3g06365
| Sequence (A. th genome BLAST matches underlined) | >01-K105094-0022-964-A01-8409 CTCACATTCGCTATTGGTGGGATGAACATCCAACAGTTGGTGAATTCCGCGTTACAATGA TAGGAAGAGCCGACATCGAAGGATCCAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC AAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTATGGGATCCTCCCTATAGTGAG TNNNATTCGTCGGAGTATAAGGGGGGGGGGGAGAAACCGAACGAAACGGGAAACGAGACC GAGCAGAAGAAAATAGTGGCGCGCCACGAAAGAAAAAATGCGCGCGAACGGGTGATAGAA CAAGACGAAAAAGATAGGGAGCTCAGAAAGACGACGTAGAAATAGGAGAGCGCAACGGGG GAAGAAAAGGAACGACGACATGCGTAAAGAGAGGGGTGGGGAGGCGAAAGAAGACTAACA GTGCGGCCGGAGGGGGGAAACACGACACGTTGGATTAGTTAATAGACCAAGCCCGGACGA AGGAAAAGAGCATAGAAGAGAGGAAGTAACGGCAAAGCGAGAAAATGAATAAGAGAAGCA CAGAGTGCGGGCCGGCAAGAGAGAGAGAGAAGACAACACCTGAGATGGGCCGCCAGGGCA CAAGAAACGGAATAAATAGACGACATGCGGAGGCGGGAGCTGCGGGCAGAATGAGAAAAA GTGACAATAACGGATGAGAAAAGGGAGGCAACGGGGAGAGAAATGCATGACGACCAATCG AATAGTAGACCGCAGCAGTATGGACCAAGTAAAGTACCAGCCGAGGCATAGAAAAGAGAA GGGTCCGGGGACCAGGCGATTGTAGGGGAACGTAGATAATAGACGATCTACCGACAAAGA AAGAGGAACGAAAGAGAGAAAGAACAGTTAGAGCAGCGGGGTAGACAAGAGTATGGAACG GGAAGGATGAGCGGTCGAAGAGAAGAATAATCGAGAGCGAGAAAGAGCAAGAAAGCTGAC GAGAACGTCGTGGGAAGAGGAAGCGACAGGGCGGAAAAGACGAAGACAGCGTGAGAGAGA CGGGGACCGCGGGGAACTAAACGAGAAGGGACGAGGACGCAGCGGAGAATAAAGAGATGC GCTGCGCGCGTGTATAGCGCAAGAGCCGCAGAGGAAAAAATAAACGAGCGGGCGCGGCGA GTACCAAACATGAAAGAAGAGGCGACCATGAGAGGACCGCCGCGGGATAAAAATAGATGA GACAAAAGAG |
| GenBank Accession | FR819145 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:14203052 - go to primer design |
| BLAST e Value | 8e-59 |
| Hit Clone Code (BAC ID) | F21A14 |
| Hit Gene Code | At3g06365 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | novel transcribed region |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At5g44770
| Sequence (A. th genome BLAST matches underlined) | >01-K034420-022-964-A01-8409 TACAGCGGATATCATACTTTATATTACCTCTACCGCTGCTTTTGTCGTGACACTCGTATG GGATCCTCCCTATAGTGAGACCTATTGGTCATTACTCTTTCGTTTTCTCCATA |
| GenBank Accession | CU458500 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:18066159 - go to primer design |
| BLAST e Value | 2e-20 |
| Hit Clone Code (BAC ID) | K23L20 |
| Hit Gene Code | At5g44770 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cysteine/Histidine-rich C1 domain family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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