SimpleSearch - Line and FST details


Line specific information

 
Line ID 966E06
Vector Used pAC161
Line Availability available as T3 set from NASC (N492694)
Segregation Analysis 50:50:50
Confirmed for Hit At4g16350
Parent of DUPLO pair none
Parent of pair(s) 7614, 8674, 10979, 11578, 11581, 75768, 75769

Gene hit F3F19

 
Sequence (A. th genome BLAST matches underlined) 
>45-K101963-0022-966-E06-8409
GGGTTTGGCCCCTACACGAGATTTTGTTGCTTCGGTAATAAGAGAGAGATTTTTGCTGTC
GTGCGAGAAAGAAAGAAAAAATCTCATTTTTAAATATCACAAATATACGTAGACTTCTTA
AAGCTATGGGATCCTCCCTATAGTGAGAGGTAG
GenBank Accession CU458534 [GenBank]
Graphic View Graphic view of sequence CU458534 of line 966E06
Predicted Position of Insertion Chr1:4473833 - go to primer design
BLAST e Value 6e-38
Hit Clone Code (BAC ID) F3F19
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit FR819316 [GenBank]

Gene hit At4g16350

 
Sequence (A. th genome BLAST matches underlined) 
>45-K113986-0022-966-E06-8409
CTTTCTTTTTCCGGCTTGTAATTTGCCTTATTAGCTTCTGCGTGCGGGACTAACATGTAT
TGGTATGTTGTGTTCTGTGTAGAGACGTGACCAAGACGTTTCCAAATTCTGTACTTCACA
CTACAGTGACAGACACTCCTAACCTGCCCGGCCGCTATTTCTTTTTCTCCATATTGACCA
TCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACATGAAGCCAT
ATTTACTCTTTCTTTTTCTCGGCTTGTTATTTGCCTTATTATCTTCTTCGTGCGGGACTA
ACATGTTTTTGTATGTTGTGTTTTGTGTAGAGACGTAACAAAGACGTTTCCAAATTTTGT
ATTTCACACTATAGTGACAGACACTCCTAACCTGCCCGGCCG
GenBank Accession HE667373 [GenBank]
Graphic View Graphic view of gene At4g16350
Predicted Position of Insertion Chr4:9242910 - go to primer design
BLAST e Value 3e-64
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g16350 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation calcineurin B-like protein 6
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37