SimpleSearch - Line and FST details
Line specific information
| Line ID | 971D05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N493161) |
| Segregation Analysis | 50:45:43 |
| Confirmed for Hit | At4g22212 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 20765, 73611 |
Gene hit At4g22212
| Sequence (A. th genome BLAST matches underlined) | >36-K113655-0022-971-D05-8409 AGCTTCCCATTGCTGATAAGTTCATCATTTCTTTCTCGCGCTTGTGATTTATTTATAGGA AGGAATCTGAATTTGTCGCTCTCTCAGGAGTGAACGTTTCTCTTTTCTGACACCGCCGCT AACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCTCCATATT GACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTATAACAA CTGTGCTCACCCTTAAGCTTCCCATTGCTGATCAGTTCGTCTTTCTTTCTCGCTTTGTGA TTTATTTAGGGAAGGAGTCTGAATTTATAACACTCCAAGGGAAAGGGCATCTAACCTGCC CAGCCACTACATACCTTGATGTTCTGACTTGTTTGCCCGTCGGTCGTGACAGAATGTATC ATGAAAATGTATTAAACAAACGT |
| GenBank Accession | HE667631 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:11754286 - go to primer design |
| BLAST e Value | 7e-59 |
| Hit Clone Code (BAC ID) | T10I14 |
| Hit Gene Code | At4g22212 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | defensin-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CU458723 [GenBank] HE667631 [GenBank] |
Gene hit At3g05250
| Sequence (A. th genome BLAST matches underlined) | >36-K105090-0022-971-D05-8409 ACAAGAGACAAGAAGCGCAGAGACAACACATAGTAAAAGAGTAAAAGAAAAGACATAGAA TAGTAAAATCAGAGACGATAAGTGAGAGAACAGAGCGCGAGATGTTATATGAGACAAAAA GAGGAAGTACATAACAGACAGCAGGAAAATAAGACATGAACAGTAACAAACAGCAGAACG ACACAAACAATANCAGAACATAATAGAGGTGATACAGAACATACAGAAAAAATACATAGA ATGAAGAACGCGACGAAACTAGAAATACCATATAGAAAACAGAGGAGAATATAGGACGAC GGCAGAAAGAGACAGATAAGACATAGAGAAATAGCATATATGAAATGAAACAGATGCAGA ACAGAGAGGAGAATACATACCAGGAACGATACAAAGACAAGCAAGAAGCAACACAGCACG CGAAGACACGATATATAGATAACAGCACTAAATATGATAAATGCGAGACTTAGGCAGACT CAGAGATGTAAGCAGAAAAGACAAGCACAAGGGATAGAGCAAACATAGTTCATAAGGCCA TAAACAGAAGAATGATGATGGAAACAGAACCATGAAACTGTATACAAAAGATAAAAGAAC TAGAACGACAAATATAAATCACAAGTATAACATAGAGAACAACACAGGGTACGAAAGAGA GCAACGACGACAACAGAGGTCACTGAAAGAAGAAAGAGAGAGAACACGACACGAAGCAGG GCAGAACAGATATATAACACGAATGAACAAACAAAGTAAAGACGAAGAAGACAAGACGAA TAGACGAGANACACGGGAGAAAGGACGGAAGAAGAAAAAGCGGAGAGACAGAGAGAAGAA GAAAGAAGAAAGAAGCTAATATGACAAACAACCGAAGAGAAATCAAGCAGGATCACACAC AAACAACGCGAGCGGATATAACAAAAGGATAAGATGACTAAAAAGTGACAGCGAAACGAA CATCAACCAGGAAGCACTCACGATGACGACACAGAAGAGCACAGAAGAGACAAGAGAGTC CAGTAAAGCTGCGATAAGAACGCAGGAGAACTAATGAGAGAAAGAGTACAAGAGACAGAG ACGAGAAATGACGACGCTACAGACATACAAGAAAGAGGCAGAGACAAGCACGGACAACAA GACGAATCAAAGAATAGCGAGCGATACAAGCGACAAAGACAGCAACGAATACACAAAGAA GCGAGCATCACCATATAGACAGACATCAAATCAGCACAAGGACTCGAGTAGAGATCAGGT AAAACCAAGCGACGCGGACAAGCGACAAAGCACACACAGAGATAGTAAGAAGCACANCTA GGAGAGATAAGATGTGAGAAGAATAAGTAAGAACAGAGAGCGAATGTAGAGCAGCGACCA TAGAGAACGCACTGTAGCACACTGAGACTATAACGCAAAGAACAACGTAGCGCATGAGAG AGAATCNCACACGCATGTATGACTAAAGACAAGAAGAGCTGAAGAAG |
| GenBank Accession | FR819383 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:1496334 - go to primer design |
| BLAST e Value | 0.001 |
| Hit Clone Code (BAC ID) | T12H1 |
| Hit Gene Code | At3g05250 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit T6P5
| Sequence (A. th genome BLAST matches underlined) | >36-K113656-0022-971-D05-8409 TGTTTCTCGCTGTCACCTATTAATGCGAAGGAATCGGAATTTGTCGCTTTCCCAGGAAGA CGTTTCCTTTTACTGTAACGCCGCTAACATCTACATTTTTGAATTGAAAAAAAATTGGTA ATTACTCTTTCTTTTTCTCCAGATTGACGCTCATACCCATTGGTGAACTGAGCATATAAA TCATGTTTTAGGACTCTAATAAACTCATGAATGTACTAATTATTGTCTATTATAAGGTTT ATGAAATCACTTGGAAGTTGGTACTGTAGTTTGATGATTTTAGACTTTTAGTATCTGTTA GCTTGACAGTTATAATTAGTGAGATAACTGTTAAAAAGCGGCTGCAAAATTAGGGTTACA AAGGTTGAAGACGATTGCAAAATTACAATTATACCCTCCATTAAATTTTTTGTGTGTACA TATTTATAATTTACAACTAACCTGCCCGGCCGC |
| GenBank Accession | HE667632 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:2245701 - go to primer design |
| BLAST e Value | 1e-146 |
| Hit Clone Code (BAC ID) | T6P5 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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