SimpleSearch - Line and FST details


Line specific information

 
Line ID 971D12
Vector Used pAC161
Line Availability available as T3 set from NASC (N493168)
Segregation Analysis 50:46:33
Confirmed for Hit At5g17500
Parent of DUPLO pair none
Parent of pair(s) 54860, 90526, 90527, 90528
Note

Gene hit At5g17500

 
Sequence (A. th genome BLAST matches underlined) 
>92-K113656-0022-971-D12-8409
GATTTGCTTTTGGTTCTTACCCTTTCGTATTCTCATCAACGACATACCATTACGTACATG
AATTGTATGTTGGCATGGGCGGCCGAGAAAGATTTGGATTGGGCGGTTTGGGCGGTTACG
GGAGTTTATTATTTCCGCGAAGGCAAACGTGGTGTAGTTGAAGCTTACGGTATGTTAGAT
GCGAATTGGCATAATGTTCATAACTATACTTATCTCCGTAGGCTCTCCGTCATTCAACCA
CCGCACACAGGTATTCATCAATCTTGCTTGTAATTTAACCAGATTATTATTACATATAGT
TTGATGTAAATTTAATAAACAGGACCCGGTGTAAAGCACAATCATCACAAGAAAATATTT
CATCCGTTAACCGGACTCTGCCTAACCTGCCCGGCCGC
GenBank Accession HE667641 [GenBank]
Graphic View Graphic view of gene At5g17500
Predicted Position of Insertion Chr5:5768858 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) K3M16
Hit Gene Code At5g17500 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Glycosyl hydrolase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g49080

 
Sequence (A. th genome BLAST matches underlined) 
>92-K113655-0022-971-D12-8409
GGTGAAGTGCCGTTTAGCTTTGAGAATAGCTTGCATATGGCTGAGGAAGAGCGTGTGATT
AATGACTTGATTGAGAAGGAGCAAAAAGACCTTCTTGAGGTTATCAAGGGTGAAACTTTT
TTAATTTGTTTTGCTGATTCTTAAGTTTTGATCTTATATGCAATGCACCAGTAGTTTCGA
TATGTGTCTAACCTGCCCGGCCGCTAATNATANNTTGTCGGTTGTGTAGGATCGGAACGA
TGGAGTAATTGTGAACTTCCTCGCTGGGCGGCTTGGTGCAGGTGAAGCGTACAGATGTGT
TAAAAGCAAAAAGCCAAGGAGTTTCACACTATTCTCCTCTTCGTGAGCTCTCACTAATGC
CACTTGGGCATACAAGAATTCATCAATGTTGCTTGTGAATTAAACAAATTTGTCTTGCTC
ATACTTTGATGTGAATATATTCATCACGACCAGGTGTCATGCAAATCTCTCGCTGAACTG
TTTTCAACCCTTAACCGGACTCTG
GenBank Accession HE667640 [GenBank]
Graphic View Graphic view of gene At3g49080
Predicted Position of Insertion Chr3:18196104 - go to primer design
BLAST e Value 5e-72
Hit Clone Code (BAC ID) T2J13
Hit Gene Code At3g49080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribosomal protein S5 domain 2-like superfamily protein
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37