SimpleSearch - Line and FST details


Line specific information

 
Line ID 971E11
Vector Used pAC161
Line Availability available as T3 set from NASC (N493179)
Segregation Analysis 50:46:42
Confirmed for Hit At3g26880
Parent of DUPLO pair none
Parent of pair(s) 84781

Gene hit At3g26880

 
Sequence (A. th genome BLAST matches underlined) 
>85-K113656-0022-971-E11-8409
ACGGGATCGTAAGTTTGTCTGTTTTATCGAAATGTACATTTCATTTTATAATAACGCTGC
GGACATCTACATCTTTTGAATTGAAAAAAAATTGGTAATTACTGCTTTCTTTTTCTCCAT
ATTGACCAGCATACTCGTTGCTGAGCCAAGATGATTGTTCGCGAAAGATGGATCTTCATA
TGATTGGTTAGCTAGAGATGATGGAATCTATTTTCATAAGGATTCGTTGCCTAACCTGCC
CGGCCGC
GenBank Accession HE667653 [GenBank]
Graphic View Graphic view of gene At3g26880
Predicted Position of Insertion Chr3:9906662 - go to primer design
BLAST e Value 3e-27
Hit Clone Code (BAC ID) MDJ14
Hit Gene Code At3g26880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Plant self-incompatibility protein S1 family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit MNA5

 
Sequence (A. th genome BLAST matches underlined) 
>85-K113655-0022-971-E11-8409
AACGGAGCGTAATTTGTCGTTTTATCAAAATGTACTTTCATTTTATAATAACGCTGCGGA
CATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCTCCATATTGA
CCAGTATACTCGTTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACAATGTTC
GCGTTGGAGAATGCCTTGTCGTTATGCGCTTTAATATTTAAATTTTCTGCTAACCTGCCC
GGCCGCTATAACTCGGCGTTGAAGACTGACGAGGTGTTGGAGTGTTACCCTTCTGTGTCC
ATGACACACTTGGACGTAGGACGTTAGAGACTGTGCCTTTGATATTTCAGGTCGTAATTG
GCCTGTCGAGATCGTATATGTCAACTAAGAGTATCATATTGTCCTCCAGTGATACAACAT
CCTGTATGAGATGTTCTACATTCCTTTCGGCCATAACAGATACGTCCTCTATTTGAATCT
TTTCACCAATGGGAATTGGGGATCCTCT
GenBank Accession HE667652 [GenBank]
Graphic View Graphic view of sequence HE667652 of line 971E11
Predicted Position of Insertion Chr5:26115730 - go to primer design
BLAST e Value 4e-11
Hit Clone Code (BAC ID) MNA5
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37