SimpleSearch - Line and FST details


Line specific information

 
Line ID 973B12
Vector Used pAC161
Line Availability available as T3 set from NASC (N493336)
Segregation Analysis 50:50:50
Confirmed for Hit At4g34750
Parent of DUPLO pair none
Parent of pair(s) 1720, 40816, 83580

Gene hit F20B24

 
Sequence (A. th genome BLAST matches underlined) 
>90-K112305-0022-973-B12-8409
CATTTACAATTGAATATATCCTGTAACTGCTGATAAGCTATTTGTTTTATCGTGTATATG
CTAATTTTGTGTTCACTAACCTGCCCTGCCGCTATAGCCTGTAATAATCTTATCTAAAAG
TTGTCATCCCATAATATGGATACATGCACGAATAAATAAGATCATGCAATAAGTATTGAG
CGCATGATTGAAAGGTGTGCACTAACCTGCCCGGCCGCTATTTCTTTTTCTTTTTTGAAG
AAAAGCAGCCGACCTCGCAATATTTACTGTTATGTTGCTTCATAAATTTCAAAAAGACAA
AATTTGTCTCTTCTCCCACTCTCGAGTACAAATCGTTTAGTTCTCATTACACTAACCTGC
CCGGCCGCTATTTTNTNNGGATTTTTTTTAACTGCGAGATTAATATAGAAACGTATCAAC
TGATGGATTAACACTAACCTGCCCGGCCG
GenBank Accession FR819570 [GenBank]
Graphic View Graphic view of sequence FR819570 of line 973B12
Predicted Position of Insertion Chr1:3522741 - go to primer design
BLAST e Value 3e-48
Hit Clone Code (BAC ID) F20B24
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g34750

 
Sequence (A. th genome BLAST matches underlined) 
>90-K112304-0022-973-B12-8409
AATAAGATCGGAAGCGTTGTTCGGATCCGTCAGATCGCTTAAACAATGGCAGAAAAAAGC
TCACATAGGATCCTAACTGCCTTGTAGCTAAGATAGTTAAACCTGCTACATGTGCAGTGT
TCTCCAAGAGAAAAAAAAAAACCCAAAAAAACAGGGGTCCTTTTAAGGGATTGTTAAACA
AAAAAAAAAACGTGTCGAATTTAAAATGTTTAAAAAAGGCTTGCAAATAAATTTCATGAC
AAAAGGATTTCAGGGTAAACTATGGTCAATTTATATGCCATCATCAGGTGAAAAATGAAT
CAAATGCTAACCGGCCCGGCCCTAAAAAGGANCCANNTANNTTTTCCNCNNTCTTCNCAA
TAAGGTGAANGATAGCTGGGCGATGGAATCCGAGGATGTTTCAGGATATTACCCTTTGTT
GAAAAGTCTCAATTGCCCTTTGGTCTTCTGAGATTGTATCTATGATATTTTTGGAGTAGA
CAATCGTGTGGTGCTCCACCATGTTGACGAATATTTTCTTGTTGTCATTGAGTCGTAAGA
GACTCTGTATGAGCTGTTCGCCATTCTTTACGGCAAGTTCTGTTAGGTCCTCTATTTGAA
TCTATGACTCCGTGGGAATTGAGGATCCACTA
GenBank Accession FR819569 [GenBank]
Graphic View Graphic view of gene At4g34750
Predicted Position of Insertion Chr4:16577578 - go to primer design
BLAST e Value 2e-25
Hit Clone Code (BAC ID) T4L20
Hit Gene Code At4g34750 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SAUR-like auxin-responsive protein family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37