DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_025172
Line Availability available from NASC (N525172) and ABRC (SALK_025172)
Confirmed for Hit At4g27510
Parent of DUPLO pair none
Parent of pair(s) 6764

Gene hit At4g27510

 
Sequence (A. th genome BLAST matches underlined) 
>25-K117144-SALK_025172C-LBb3
ATTATTTTGCCGATTTCGGAACCAACGGTGGAAGTCAGACAAGATTGCTAAAGAAAGGTG
GAATAAGAAGCAAAAAGCTTGGAGAGAGAACAGAGGAAGAGGGTCTAAAAGCTGAATGTT
AATCTTCTGTTGTAAAAGAGTTCATCATGTAGAAATGTCACTACTTTAGTCTCTGATAAT
TATGTATAAAATGGTTTCTATTATCATGGAAATTTTTTGACCCAACGACCTTGCAAAGAG
ACGAAAAGAAATATCAAATCTCAAGCAGTACATTATGGAAAACT
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At4g27510
Predicted Position of Insertion Chr4:13746388 - go to primer design
BLAST e Value 7e-154
Hit Clone Code (BAC ID) F27G19
Hit Gene Code At4g27510 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 2-isopropylmalate synthase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g50250

 
Sequence (A. th genome BLAST matches underlined) 
TTATGGTTATCTTCTTGTGACTTTACCATTTCTTTTATTCATTGCTCTCTGTGTTTGCAG
AATTTGGAAGGCAGAGCAATTAAAGTGAACGTGGCTGAGGAACGAACAAGGCGTTGATTT
TGATAGCTCAGTGAGTGTTAATATTGTGAGTTATGATTAGAAATGTTCTCACTTACAATT
CCAATGTAGCGAGTATGTGAAACCAAACTTGAGTTCAAGCT
GenBank Accession BZ661699 [GenBank]
Graphic View Graphic view of gene At5g50250
Predicted Position of Insertion Chr5:20452793 - go to primer design
BLAST e Value 1e-122
Hit Clone Code (BAC ID) K6A12
Hit Gene Code At5g50250 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation chloroplast RNA-binding protein 31B
Insertion Classification CDSi
Confirmation Status failed


Last Updated on Thursday, 10 June 2021 13:37