DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_060558c
Line Availability available from NASC (N653246) and ABRC (SALK_060558c)
Confirmed for Hit At4g29240
Parent of DUPLO pair 2538
Parent of pair(s) none

Gene hit At3g60940

 
Sequence (A. th genome BLAST matches underlined) 
TGGGTAACCAGGTAGTCTGACCGGATCACCATATTGAGGCCCAATAGTATCGTTTGGAGG
AGATGAATCCGTAGCTTTAATAAATTTGATATTAATGNNNNNNNNNNNNNNNNNNNNNG
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At3g60940
Predicted Position of Insertion Chr3:22522614 - go to primer design
BLAST e Value 4e-48
Hit Clone Code (BAC ID) T27I15
Hit Gene Code At3g60940 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Putative endonuclease or glycosyl hydrolase
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At4g29240

 
Sequence (A. th genome BLAST matches underlined) 
CAATTAGAACTTGTTTAGTAGGTGGAACTTAAAAACCATTATTAGTTAACTTATCAAGAA
CGGAATCAAACTAGTGCATCCATTCAAATGACAAATGTAACAATTTGTCAAAACATGTGA
TTCAATATTTTACACTAAAATGCATTGAAATAACAAAGTGGAACAAAAGGAAAAAGAAGA
AAAACCCGTGATATGATTCATGCAATCATAAGTTGAACATAAACAGTAAAACTTAACAAT
ACAAAGGCAAATGTGACATAACTACACAAGGAACAAATAAGAACTCTTTTTGATAATCTT
GTCCCCTCTCTCATATCATCAATGCTTCTTCAACCACATCCACTCTGTTTTTCATAATCT
CACA
GenBank Accession BH910604 [GenBank]
Graphic View Graphic view of gene At4g29240
Predicted Position of Insertion Chr4:14418331 - go to primer design
BLAST e Value 1e-171
Hit Clone Code (BAC ID) F17A13
Hit Gene Code At4g29240 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat (LRR) family protein
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on Thursday, 10 June 2021 13:37