SimpleSearch - Line and FST details
Line specific information
| Line ID | 544F04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N452192) |
| Segregation Analysis | 50:42:30 |
| Confirmed for Hit | At2g42200 |
| Parent of DUPLO pair | 2727 |
| Parent of pair(s) | none |
Gene hit At2g36590
| Sequence (A. th genome BLAST matches underlined) | >30-K020964-022-544-F04-8409 NAGCCATTTACAATTGAATATATCCTGCCACCGCTGACCGCTTTGCACCCGGAGGACGCT TGCACTGATTGATGCTACACCAAATTTGATGGTTGAATACTGAAAACCCTTCTTTTCAAA TGTGATATCCCAATACGATATACCAACATCCGCTAAAACTGAAATAACACTTTTTCTTTT TTATAGTATACCTAACACTGACATTGAAATTGAAAGCTAGAGCAACACCCCTATTGAAAA CCATCTCCATCATGGATCCTGCAAAAACTTACATCAAAGCTTTGACTCAATCTTTTCTTT AACGCTATGTCCCCGCTGTCCCCATGATTTGCCTCTGATATTTCGAGAAAATTGCATGTA ATCTTTTGCTTCCACAGATTTCACTGTATTATATATATAAAAGAAAATCAAGAGATAGAC AAACAGAACCAGACCATAGATGGACTATGCCAAAAGAAAATCATAATC |
| GenBank Accession | BX572252 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:15345772 - go to primer design |
| BLAST e Value | 1e-27 |
| Hit Clone Code (BAC ID) | F1O11 |
| Hit Gene Code | At2g36590 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | proline transporter 3 |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | BX572252 [GenBank] |
Gene hit T23K23
| Sequence (A. th genome BLAST matches underlined) | >30-K022299-022-544-F04-8409 CTTGAATATATCCTGTAGTAGTTGGTAGCTGTACTGGCCGTTAACCCACACCTATTGGCA TACTATGAGAGTAATAGAGTTAAGTGTAGTCCTACGATTTACAGAAGTCCAGATCTATGG GATCCTCCCTATAGTGAGACGAACCCTCCACTGGTTGAGGATGGCTCGGTGCGACCCTCT CTCCTGTCCGACGGAGTGGGCCAATGTAAGAACATGATGGTGGTCTTCCTATACTCGCTG GTTGCAGCCTACTAACCGAATTATCATTTTATCACCTTCCCTATGTGTTAATCAGCCGAA CATATTTTGGATTATTGCGTGCCAACATAACACAGAATCC |
| GenBank Accession | BX650249 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:25508040 - go to primer design |
| BLAST e Value | 8e-25 |
| Hit Clone Code (BAC ID) | T23K23 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At2g42200
| Sequence (A. th genome BLAST matches underlined) | >30-K022309-022-544-F04-8409 AGCCATTTACAATTGAATATATCCTGCAAATGTTGATGGATATGCAGTGCGTTCACCCCA TCTACTTGGATATATTCATGGTCATTTGGATATTCGTGATCATACGATTTCCCCACCTCC GTATTCGTGGTATATCTTCTGGACTGAGATGAACCCTCCACTGAAAGAGGATGACTCAGT GAAATCCTCACCAGAGTCAGACTGATAACGCCACAGACCCCTAACAATATTATATAAACC ATATTCCAATTTACTCTAATCTCCTAGTAATGGCACACAACTTCTGCTTGAAAGTTTAAT TAGAAAACATAAATATTATTATACGAGCCTTACAATCAATTATTCAATTACATAGTAGAT TAATAATTGGACAGGACACGTCTTATAATTAAACGATAAATCGAAATCAATGTTAATACA TATGAAATATACCATCTCATCTATAAAATAGATCGGGACGCAATATAAGGAACTAATCGC AACGTACTAAATTATTATATAAATTTATCAAAAG |
| GenBank Accession | BX650250 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:17587805 - go to primer design |
| BLAST e Value | 2e-07 |
| Hit Clone Code (BAC ID) | T24P15 |
| Hit Gene Code | At2g42200 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | squamosa promoter binding protein-like 9 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |