SimpleSearch - Line and FST details


Line specific information

 
Line ID 286A06
Vector Used pAC161
Line Availability available as T3 set from NASC (N427366)
Segregation Analysis 50:50:38
Confirmed for Hit T22O13 At5g24520
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit T22O13

 
Sequence (A. th genome BLAST matches underlined) 
>41-K015494-022-286-A06-8409
AATTTGATCCATGTAGATTTCCTGGACATGAAGCACTTTACAATTGAATATATATCCTGA
GCTGCACCACTTTCATTGATTACTAAAGAACAATATTTAACTGCTTACATGTATTAGGTA
TCCGATTGACTGAATCTTTTATATGTACTTGTGATAAAGTGGATAATGATCCTGACAGAC
ATGCAGCTATGGTGATCCTCCTTTAGATGAGTTCTGTTTCGCTACATAATTCTCATTTGC
TATGGGATCCTCCCTTNAGTGAG
GenBank Accession AL944953 [GenBank]
Graphic View Graphic view of sequence AL944953 of line 286A06
Predicted Position of Insertion Chr2:11617880 - go to primer design
BLAST e Value 6e-09
Hit Clone Code (BAC ID) T22O13
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL944953 [GenBank]

Gene hit At5g24520

Sequence (A. th genome BLAST matches underlined) 
>41-K015494-022-286-A06-8409
AATTTGATCCATGTAGATTTCCTGGACATGAAGCACTTTACAATTGAATATATATCCTGA
GCTGCACCACTTTCATTGATTACTAAAGAACAATATTTAACTGCTTACATGTATTAGGTA
TCCGATTGACTGAATCTTTTATATGTACTTGTGATAAAGTGGATAATGATCCTGACAGAC
ATGCAGCTATGGTGATCCTCCTTTAGATGAGTTCTGTTTCGCTACATAATTCTCATTTGC
TATGGGATCCTCCCTTNAGTGAG
GenBank Accession AL944953 [GenBank]
Graphic View Graphic view of gene At5g24520
Predicted Position of Insertion Chr5:8371851 - go to primer design
BLAST e Value 2e-08
Hit Clone Code (BAC ID) T31K7
Hit Gene Code At5g24520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Transducin/WD40 repeat-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details