SimpleSearch - Line and FST details
Line specific information
Line ID | 001A08 |
Vector Used | pAC106 |
Line Availability | available as T3 set from NASC (N400008) |
Segregation Analysis | 50:24:24 |
Confirmed for Hit | At4g16500 |
Parent of DUPLO pair | none |
Parent of pair(s) | 2082 |
Gene hit At4g16500
Sequence (A. th genome BLAST matches underlined) | >57-K025788-022-001-A08-8409 CATTTACAATTGAATATATCCTGATAGTTTAAACCGAAGGAGGGAAACGACAATCTGATC CCCGGGTATGGGATCCTCCCTATAGTGAGAAGTTAAATACTTCATCATCATATTTTCGTT TCCTTAACCTTTTTTAATTTTCGTGTGTTTAATGGTCTCTGGTGTTTATTATATAGACAA GACTTGTAGATTTGGTTTTGCTTTGGAATGTGGGCTGATAGTTCCAGAAATTTACGGAGA TCTCAATTGTGTGTTACGCGGTGACGAGTGAATTGTCTTTTTACACCGTCAGATTTGACA ACTGGATAAGTCCACGTGGCGAAAGATAATGTATGGGATCCTCCCTATAGTGAGANNNNN NNTCACTNTATTCCCNAATTATTTAGGTTAATAGATCTTGAATATCTCGGTGGAGAGAGC CTAAATAAACAAAATTGATTAACGCTATGATGTATGAACACCCATTATGTGTTAAATTTT ATAAGAATATTATCATGAATATC |
GenBank Accession | CR394581 [GenBank] |
Graphic View | ![]() |
Predicted Position of Insertion | Chr4:9301806 - go to primer design |
BLAST e Value | 3e-130 |
Hit Clone Code (BAC ID) | FCAALL |
Hit Gene Code | At4g16500 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Cystatin/monellin superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit T25K16
Sequence (A. th genome BLAST matches underlined) | >57-K026818-022-001-A08-8409 AGCCATTTACAATTGAATATATCCTGATAGTTTAGACCGAAGGCGGGAAACGACAATCTG ATCCCCGGGTATGGGATCCTCCCTATAGTGAGACGTATTATACTTCCTCTTCGGATTTTC GTTTCATTAACCGTTTTTAATTTTCGTGTGGTTACTGGTCTCTGGTGTTGATTATTAATA CTGGACTTGTATATTTGGTTTTGATGTGGAATGTCGCTTTCTATACCTTAATTTTGGCTA GATCTCGATTGCGGGCTTAACGTTGCCAATTGAATTGCCTTTTTATACCGACGAATATGA TAAATGGATAAATTAGAGTGGATCTATTATCTAAACCCCCAAAAGACAAAAGAAGAAAGT AGAAAGAAAAGGTAGGCAGAGATATAATGCTGGTTTTATTTGTTTGATAAAAGATATTGG TATTTCTGCCAATATTATATTTTCACTTAAGAAGACTTGAACCTACCACACGTTAATAAC TAATGGGAGCCACTAAATAGTTGCATGAGTCCCACCCTAG |
GenBank Accession | CR394582 [GenBank] |
Graphic View | ![]() |
Predicted Position of Insertion | Chr1:2252 - go to primer design |
BLAST e Value | 1e-45 |
Hit Clone Code (BAC ID) | T25K16 |
Insertion Classification | Genome Hit |
Confirmation Status | unknown |
Other FSTs Supporting this Hit | CR394582 [GenBank] |
Last Updated on 10.06.2021 13:37 |