SimpleSearch - Line and FST details


Line specific information

 
Line ID 001A08
Vector Used pAC106
Line Availability available as T3 set from NASC (N400008)
Segregation Analysis 50:24:24
Confirmed for Hit At4g16500
Parent of DUPLO pair none
Parent of pair(s) 2082

Gene hit At4g16500

 
Sequence (A. th genome BLAST matches underlined)
>57-K025788-022-001-A08-8409
CATTTACAATTGAATATATCCTGATAGTTTAAACCGAAGGAGGGAAACGACAATCTGATC
CCCGGGTATGGGATCCTCCCTATAGTGAGAAGTTAAATACTTCATCATCATATTTTCGTT
TCCTTAACCTTTTTTAATTTTCGTGTGTTTAATGGTCTCTGGTGTTTATTATATAGACAA
GACTTGTAGATTTGGTTTTGCTTTGGAATGTGGGCTGATAGTTCCAGAAATTTACGGAGA
TCTCAATTGTGTGTTACGCGGTGACGAGTGAATTGTCTTTTTACACCGTCAGATTTGACA
ACTGGATAAGTCCACGTGGCGAAAGATAATGTATGGGATCCTCCCTATAGTGAGANNNNN
NNTCACTNTATTCCCNAATTATTTAGGTTAATAGATCTTGAATATCTCGGTGGAGAGAGC
CTAAATAAACAAAATTGATTAACGCTATGATGTATGAACACCCATTATGTGTTAAATTTT
ATAAGAATATTATCATGAATATC
GenBank Accession CR394581 [GenBank]
Graphic View Graphic view of gene At4g16500
Predicted Position of Insertion Chr4:9301806 - go to primer design
BLAST e Value 3e-130
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g16500 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cystatin/monellin superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit T25K16

 
Sequence (A. th genome BLAST matches underlined)
>57-K026818-022-001-A08-8409
AGCCATTTACAATTGAATATATCCTGATAGTTTAGACCGAAGGCGGGAAACGACAATCTG
ATCCCCGGGTATGGGATCCTCCCTATAGTGAGACGTATTATACTTCCTCTTCGGATTTTC
GTTTCATTAACCGTTTTTAATTTTCGTGTGGTTACTGGTCTCTGGTGTTGATTATTAATA
CTGGACTTGTATATTTGGTTTTGATGTGGAATGTCGCTTTCTATACCTTAATTTTGGCTA
GATCTCGATTGCGGGCTTAACGTTGCCAATTGAATTGCCTTTTTATACCGACGAATATGA
TAAATGGATAAATTAGAGTGGATCTATTATCTAAACCCCCAAAAGACAAAAGAAGAAAGT
AGAAAGAAAAGGTAGGCAGAGATATAATGCTGGTTTTATTTGTTTGATAAAAGATATTGG
TATTTCTGCCAATATTATATTTTCACTTAAGAAGACTTGAACCTACCACACGTTAATAAC
TAATGGGAGCCACTAAATAGTTGCATGAGTCCCACCCTAG
GenBank Accession CR394582 [GenBank]
Graphic View Graphic view of sequence CR394582 of line 001A08
Predicted Position of Insertion Chr1:2252 - go to primer design
BLAST e Value 1e-45
Hit Clone Code (BAC ID) T25K16
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit CR394582 [GenBank]


Last Updated on 10.06.2021 13:37