SimpleSearch - Line and FST details


Line specific information

 
Line ID 005H11
Vector Used pAC106
Line Availability available as T3 set from NASC (N400479)
Segregation Analysis 50:44:39
Confirmed for Hit At5g26860
Parent of DUPLO pair none
Parent of pair(s) 2078, 3119, 3184

Gene hit At1g67790

 
Sequence (A. th genome BLAST matches underlined) 
>88-K014768-022-005-H11-8409
TTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATATCCTCTCTAA
CTGCGACTACAATCTGCCGTGCTTCTACGAGACGATCTGAGCCGAGGTGACTCTCTTTAG
ACAGTCTCAACATTCTTGACTGGATTGCCAGCTCTAACAAATGTCCGACTAGTCCCTATT
TACATGTCATTACAAGGATGGAAGAGTTGTGTGCATGGGAACCGCCGCTTACATACTGAA
TCTCACCGAGGACTCCTTCTTCCATGAGAGCCGGCGGGTCTGGGATCCTCCATGAAATGA
GANACCGGCTCCCAAAGTTCCGTATTCTGGGATCCCAATGTACGCAGACTATGCACAGGA
GAGATACCCTTTACTACCTTTTTCTCATGCTATAGTATCCTACTATTNATGACGAAGCAA
TGTTGGTTGTTATCGATTCTAACGGGAGGTTCGTCAACATGAATGCCATGGATATGGTGT
TGATTGGGGGTGGGAAAGCATATCC
GenBank Accession AL751626 [GenBank]
Graphic View Graphic view of gene At1g67790
Predicted Position of Insertion Chr1:25418643 - go to primer design
BLAST e Value 9e-39
Hit Clone Code (BAC ID) F12A21
Hit Gene Code At1g67790 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sieve element occlusion protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g26860

 
Sequence (A. th genome BLAST matches underlined) 
>88-K014769-022-005-H11-8409
TTGATCCATGTAGAATTTCCCGGACATGAAAGCCTTTACAATTGAATATATCCTGACAAA
TATGCAAATATCAATCTGATCGATTATAACAAGAGGATTGGCTGATGCCACACTCTTTAG
ACATTGCACCATCTTGTCCTGGCATGGCACCAACATATGTCCGACGAGGCCCCTAAACAT
GTAATTACAAGAATGGATATTTGTTCCTATGGGAACCTCCCTTAANTGAGTTTATATCAC
CACTGACTTGTGTGACCTGATACCAATGTACGGCTGTGGGCTCCAATGAATCGGGTTCCG
GTTCCCAAAGTACGGATTTGGGTTCCCAATGTACGTGCTATCCACAGGAAAGAGACCTTA
TACACCTTTTTCTCCTGCTAGAGCAACTTGCCCTATAGTGATACTCCTATGGNGGAGANA
TCNATTCTAACGGGAGGTTCGTCAACATGAATGCCATGGATATGGGTGTTGATTTGGGGT
GTTAAAGCATATCCATTCTCAGTT
GenBank Accession AL751627 [GenBank]
Graphic View Graphic view of gene At5g26860
Predicted Position of Insertion Chr5:9454862 - go to primer design
BLAST e Value 6e-43
Hit Clone Code (BAC ID) F2P16
Hit Gene Code At5g26860 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation lon protease 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37