SimpleSearch - Line and FST details
Line specific information
| Line ID | 009G02 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N400842) |
| Segregation Analysis | 50:11:10 |
| Confirmed for Hit | At2g27820 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4347, 4349, 4430, 4453, 8440 |
| Note |
Gene hit At2g27820
| Sequence (A. th genome BLAST matches underlined) | >15-K027912-022-009-G02-8409 CGACATCGCCTATTGTCATCACTCACGTGCACTTTCTCGTGAGCATACACTATACTCGTC TTAAACGGCCGATCAGTTCTCGGTATAATCGGTTCACGCGCCAACATCACAAAGCGCGTG ACGTTACTCGCGTCATCTTGTATCCCATCTTCCAAAATCTCCAATCCGTAGATCTCCGCC GCGCGTGCACTCGCAATCGCGGCGGTGTCACGGATATTATTCGCAGCGATAAACTCCGCC GCACCGGCGGTATCATCAACAGCTTCACGAGCTACGTTGAGACCGAGTTTAGTCAACGTG TGTTCGCATTGAGCTAGTCCTTGAGGATGANAGATCGCACGAGTGAGAAACTCTTTCGGT ATGGAAACCTCCCTATAGAGATAGTCAAGAGAAGAAACACTAACGCGCGAACTATTGACC TTCAAGAATGTCCAACTCCGCAGCGAACATATATAACAATAGTTCT |
| GenBank Accession | CR769851 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:11857864 - go to primer design |
| BLAST e Value | 5e-178 |
| Hit Clone Code (BAC ID) | F15K20 |
| Hit Gene Code | At2g27820 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | prephenate dehydratase 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL751975 [GenBank] |
Gene hit At2g46020
| Sequence (A. th genome BLAST matches underlined) | >63-K014860-022-009-G02-8409 CTGATCCATGTAGATTTCCCCGACATGAAGCTCATTTACAATTTATCATTGAAAAAAATT GGTAATTACTCTTTCTTTTACTCTCTGCTTTTGCGTTTAGGAACATTAGTTTGACTAAGA TTGAGCCTATGGGATCCTCCTATTAGTGAGATCGGAATCCGGCCATGGGCCCGGCTGGTC GGACTGCTTCCACGTCATCCGCTGCTTCTCCTTCTNCTTCCTCTTCATCTGTGCAGCAGC AGCAACAGCAACAGCAACAGCAGCAACAGCAACAGCAGCTGGCGCCTATGGGATCCTCCC TTNAGTGA |
| GenBank Accession | AL751976 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:18923336 - go to primer design |
| BLAST e Value | 6e-34 |
| Hit Clone Code (BAC ID) | F4I18 |
| Hit Gene Code | At2g46020 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transcription regulatory protein SNF2 |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At1g08520
| Sequence (A. th genome BLAST matches underlined) | >15-K027837-022-009-G02-8409 GTCGCGTCATGGTCTCCAGATTCGGCCTGCAGACTCTTTCGCTGCAATCTCCTCCCTGAT CTCTTACCTAAGCCTCTGTTTCTCTCCCTCCCCAAACGAAACAGAATTGCCTCGTGCCGC TTCAATGGAGGGGATCCTCCCTATAGTGAG |
| GenBank Accession | CR769850 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr1:2696436 - go to primer design |
| BLAST e Value | 4e-52 |
| Hit Clone Code (BAC ID) | T27G7 |
| Hit Gene Code | At1g08520 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ALBINA 1 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 009D11 or 885D07 |
| Other FSTs Supporting this Hit | CR769850 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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