SimpleSearch - Line and FST details
Line specific information
| Line ID | 009H04 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N400856) |
| Segregation Analysis | 60:60:46 |
| Confirmed for Hit | At4g13240 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At4g13240
| Sequence (A. th genome BLAST matches underlined) | >19-K105032-0022-009-H04C-35St CAGCATCGAAATATTCGCTTTTTTCGTCCATTAGACTATCTATTGTGATGGTGGATTTAT CACAAATGGGACCCGCCGCCGACAGAGGTGTGATGTTAGGCCAGGACTTTGAAAATTTGC GCAACTATCGTATAGTGGCCGACAAATTGACGCCGAGTTGACAGACTGCCTAGCATTTGA GTGAATTATGTAAGGTAATGGGCTACACTGAATTGGTAGCTCAAACTGTCAGTATTTATG TATATGAGTGTATATTTTCGCATAATCTCAGACCAATCTGAAGATGAAATGGGTATCTGG GAATGGCGAAATCAAGGCATCGATCGTGAAGTTTCTCATCTAAGCCCCCATTTGGACGTG AATGTAGACACGTCGAAATAAAGATTTCCGAATTAGAATAATTTGTTTATTGCTTTCGCC TATAAATACGACGGATCGTAATTTGTCGTTTTATCAAAATGTACTTTCATTTTATAATAA CGCTGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCT CCATATTGACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTT ACAATTGAATATATCCTGATGGATCTTCGAACTACTCAGGAGAGGAAATAGAGAAGCTTG AATCACAAAACTCATCAAAGACGACATTGCTTGATTTTATTGGTTGGAGTGACAATAGTT CAAAAGGGCAGTCAGAGAAACCTCCAAAATCTCCGAGAATGACGCCAAAGAAACTCTCAT ATTTGGAGAAGCTTGAGAACTTAAATGGTTTTAGGAGCCCTAAAGATAGGCATTGAAGAT GAATCAAAAGACATGTGAACAACTAAAATGATACAATTGAAGAAGCCATATAAGTGTGTA TATTTAGGCAAAAGAATAAACAATTAGCAATAACATATCT |
| GenBank Accession | HG968557 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:7682198 - go to primer design |
| BLAST e Value | 1e-173 |
| Hit Clone Code (BAC ID) | F17N18 |
| Hit Gene Code | At4g13240 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RHO guanyl-nucleotide exchange factor 9 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR799989 [GenBank] CR934000 [GenBank] CR769859 [GenBank] |
Gene hit At4g03298
| Sequence (A. th genome BLAST matches underlined) | >76-K016930w-022-009-H04T-8409 CTGTAATTATAGTAGTATCATGAAAACCAAGCCGGTTTAAATAATACCGATTACGAAAAG GCAAATCAATTAGACGTGGGGATAGTTTTGACACTGGGCTTTCGTATTGTCAAATTTGAA GATGGGCTTTTGTACAAAGCCCAAATACTACAACATTCGGTTACATTAAACCGACAACAA CGGAAAGGAAAGTCAATGAACGAGGGTAGATACGACATTTCAGAGACGGTGTTTTAGGGC TATGGGATCTCCCTTATAGTGAGANCNAAANAANGNTATATCNNAAATTTATATATGATT CATGACGGCCAATATTTTCTTAATCTTTCCTAGATGCTCCTCCTGACAAGAGAGAGCATC AGCACCTGTACCGAAAGCATCTAGAGCTCAGCATGACTCCGCTGTACATCGTAATGTAAT TCCGAGTTTGAGGCGATCCAAGGTGAGATGAAGATAGTTCGCGATCGTCTACTAATGTGA CTATCCGAGTCTAGAGATAGTTTCTACCTGCGTGACGAGGTCCAAATTGATGCTAATAAA AAGCTATAGCTCTAATCTAA |
| GenBank Accession | AL935927 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:1446625 - go to primer design |
| BLAST e Value | 3e-125 |
| Hit Clone Code (BAC ID) | F4C21 |
| Hit Gene Code | At4g03298 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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