SimpleSearch - Line and FST details
Line specific information
| Line ID | 011F07 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401027) |
| Segregation Analysis | 50:44:30 |
| Confirmed for Hit | At1g23310 At1g23310 |
| Parent of DUPLO pair | 2490 |
| Parent of pair(s) | none |
Gene hit At3g41762
| Sequence (A. th genome BLAST matches underlined) | >54-K012433-022-011-F07-8409 TGAAGCCGTTACAAACAGGGTCGGAGCTTTTTCAGCATTTCTCGGAAAAAATTGCTGAGT GGCCGAGAAGAATGGGCGTGTCATGCGTGGGCTGACATGGATTCTTCGAGGCCTATGGGA TCCTCCCTATAGTGAGTCTATTTACTCAACAGAGACCGCCGTACTCGATGCGGATCACTG AAGACAATACCCGAGACCACCCACGTCCGTGTCATAGTCATTAGTGCTCCAATACCGTTC TTGCACAAGCATCAAAAGCGAAGCAAATAATCTCTAGAAGAGAATAACCTAGTGGTGGAG ATTCCACACGAACAGATTGGTAGGTTAGCCCTGTGGTGGACCTGGCTATCTGCAGAAATA TATGCGCATGGAACATGACCAATAGGGTCGATCCACGTGTCCGTGCGCTTTTGTTTCGTC CTCTTTTAGACCCAGCAGCCAGCAGCTGTTGTGTATACTATGGGATCCTGCCTATAGTGA GTCGAATTAC |
| GenBank Accession | AL752260 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:14196141 - go to primer design |
| BLAST e Value | 3e-38 |
| Hit Clone Code (BAC ID) | F21A14 |
| Hit Gene Code | At3g41762 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g23310
| Sequence (A. th genome BLAST matches underlined) | >54-K013044-022-011-F07-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTTACTACTGTTTTTCCCGCCTTCGGTTTAATCCACTACTACAGTTA AATCCTTCAAAAATAAAAAAAGAAGGGTAAAGAATCTGCTACTACTGTTTCTTTCTTGCT CATCTGATCTCTTCTTATGAACTCATTCCACTTGTGGATTTTGACAGTGTGTTCCATCTG AGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAGATCATGGATAGCTTCAAGAAG TTCAACGACGAGTTCATGACTCAGTATGATAATAACTTTGGTTATTCGAAAATGTGATTA CTTCTTCTTCTGAACGACTATTGTGTTCTGCTACACTCTTTAAAGCTAAATCTCTGTAGT ACACTCTTTCTCTTTGCCCTATTCTATAAACCATATCTCTCTCTTTGTGTCTCTTTTTTT TGGGTGTAAACTCTCTCTTGNGTCTCTATTTCTATTTTCAATTGGGAAACTGATTAAGAT CTTTTTCTCACTGAAATGAAATTTAGGCCCTAGAATATTTTTTTTTAATCAACGGGGGAT AGCCTTTTTTTTAGTGTGGCAATGAGGAAATTTGTAATTATGCTAA |
| GenBank Accession | AL752261 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:8268981 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F26F24 |
| Hit Gene Code | At1g23310 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | glutamate:glyoxylate aminotransferase |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g23310
| Sequence (A. th genome BLAST matches underlined) | >54-K012257-022-011-F07-8409 AGTGTCGGAGTTTTTTAGCATTTCTCGGACAAAATTGCTGAGTGGCCGAGAAGAATGGGC GTGTCATGCGTGGGCTGACATGGATTCTTCGAGGCCTATGGGATCCTCCCTATAGTGAGT CGTATTACTCACTGAAAGCGACGAAGAGGATTTGTGAGACAAAAGTCAATTCACGATATC TCTATATCCGTGTCTAGTTATTATGCTACGGAAGACCGATCTTGCTTAATTATAAAAATA GAAGCAAATAATCTTTGAAGAGAATAAAAATGTGGTGGAGATTCCAGACGAACAGATTGT TAGATATGTCATGTTATGGACTGTCTATCTGAGTAAATAATGCGTAGGGAACATGACCAA TAGGGTCGATCCACGTGTCCGTCGTTTTTGTTTCGTCCTCTTTAAAACGCAGCAGCCAGC AGCTTTGTGTCTACTATGGGATCCTCCCTAT |
| GenBank Accession | AL752259 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:8271742 - go to primer design |
| BLAST e Value | 2e-125 |
| Hit Clone Code (BAC ID) | F26F24 |
| Hit Gene Code | At1g23310 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | glutamate:glyoxylate aminotransferase |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL752258 [GenBank] AL752259 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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