SimpleSearch - Line and FST details
Line specific information
| Line ID | 011G10 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401042) |
| Segregation Analysis | 50:41:30 |
| Confirmed for Hit | F2P9 At3g58390 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1409 |
Gene hit F2P9
| Sequence (A. th genome BLAST matches underlined) | >25-K119267-0022-011-G10C-8409 CATTTACAATTGAATATGATGGCACGTGTTTGTGTGAGACTGTTAACATTTTGCATAATG GACTCAACAACATTTGCATAATTATTTACTAACTTTCAACTTTGGCTCCTTCCACTTGTC ATTTTACGGGATTATTTGAAAAGCTGGTTTTTTTTGGTACAATTAACAAATAGAGTTATA CTTATTCCCACAAGATATCTTTGATTCTTAATTTCTCCCTCCATAATCAATCATAATGGA ATACTATAAGTGTAAACATTAATAAACAACAAAACGTGATTTGGTTTTTAAAAAGTGAAA TCACATCTCATGTCCTATGCTACTCAGCACCTTCCTCGACAAAAGTGGTTCTATTTCTTC TTGTATCTTTTGTCGCAGTTGATTACAAACAACATTGTTCACTTAAATGTATTAGATTTG GTGAAGTAGAGAGATCTCTTTATGGATTTTCAACTACTATGCCCATACAATGATGTCGAT GTTTCATTCTTTCAGAGAGTTATGCACACATGTTTATTAATTAGGGAGCCCATATGATAC AGATTGTTTTGTATAAATGATGGACCTAACGTGTAACTGGCAGATCAATTTGTATGTTGT AGTCGAATCTTCTAATTCCCTCAACAACTCTTCTCGTAATGAACACTGTCGTACATGGTT GAGAAATCAA |
| GenBank Accession | LN713375 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:27859526 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F2P9 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g58390
| Sequence (A. th genome BLAST matches underlined) | >79-K013043-022-011-G10-35St NATGGACGTAAAGGATCCCGCATTTTCCCCTATCCTTCGCAGACCCTTCCTCTATATAAG GAAGTTCATTCTATTTGGAGAGGACAGGGTACCCACGTGATAGATTGTCGTTTCCCGCCT TCGGTATAAACTATCAGCTGATCCAATGGAGATAGTCAACAGAATCACACAAACACGTGC CATCGCCATAAGACCATAGACTACCATTAATTCTACTCAATGACTCCATCTCTAAGTCGA ATAGAAAGCAAATACCTTGGAAAGAAAGAGATCTTTGACCCAGACTGAACGTGTTAAACT TAAGCTATGGGATCCTGCCTATACCGAGTCGTATTACT |
| GenBank Accession | FR800137 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:21601122 - go to primer design |
| BLAST e Value | 3e-29 |
| Hit Clone Code (BAC ID) | F9D24 |
| Hit Gene Code | At3g58390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Eukaryotic release factor 1 (eRF1) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL752301 [GenBank] FR800137 [GenBank] |
Gene hit At3g51720
| Sequence (A. th genome BLAST matches underlined) | >79-K012257-022-011-G10-8409 GGGATCACTAACGGACATCTACATAGGCCGCATAGTGAAACTCACAGATTTTAAAATGAC ACTATTTCAACTAACCGTTGGACGTGCTTTTTTCTGCTTTGCGAATTGCGACTATGGGAT CCTCCCTATAGTGAGTCGTATTACTC |
| GenBank Accession | AL752300 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:19184746 - go to primer design |
| BLAST e Value | 9e-27 |
| Hit Clone Code (BAC ID) | T18N14 |
| Hit Gene Code | At3g51720 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | WEB family protein (DUF827) |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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