SimpleSearch - Line and FST details


Line specific information

 
Line ID 012E06
Vector Used pAC106
Line Availability available as T3 set from NASC (N401110)
Segregation Analysis 50:40:28
Confirmed for Hit At1g78390
Parent of DUPLO pair none
Parent of pair(s) 1114, 4024, 4218, 4268
Note

Gene hit At1g78390

 
Sequence (A. th genome BLAST matches underlined) 
>45-K012543-022-012-E06-35St
TTGACGTAAGGGATGACTGCACAATCCCACTAGTCCTTCGCAAGACCCTTCCTCTATATA
AGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGC
CTTCGGTTTAAACTATCAGTGTTTCTCAATTCCTCGACCGAACTTTCTCAACTTCATCTT
CCTCTTCGAGACCTAAACTTCAATCTCTATCTTTTTCCTCAACACTTAGAAACAAGAAAC
TATGGGATCCTCCCTATAGTGAGTCGTATTACTCACCGNGNNTTAGTCGCATAAAGTAGA
ATACTTGCGACTATGGGATCCTCCCTATAGTGAGTCGTATTACTC
GenBank Accession AL752397 [GenBank]
Graphic View Graphic view of gene At1g78390
Predicted Position of Insertion Chr1:29492682 - go to primer design
BLAST e Value 4e-47
Hit Clone Code (BAC ID) F3F9
Hit Gene Code At1g78390 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation nine-cis-epoxycarotenoid dioxygenase 9
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g31340

 
Sequence (A. th genome BLAST matches underlined) 
>45-K012438-022-012-E06-8409
GCTTACTGCCGACTTCACATATTCCTAGCTCCGTTATTTTCCCACTCAAGGAAAATACTA
CTGCTTTATTAGCATCAGAGAAAGCCAAATGTAAAACTGTGTCAAACTAATACCTCTATG
GGATCCTCCCTATAGTGAGTCGTATTACTCAGNNTAGACGCGCGCGCACCCGCTTCCTTT
TGCTCACCCTAAAAACGCACACGTCCGCAGCGTTCTTATAAAATGACACTACATTGTGAT
AAAACCGACAAACTACGATGCCGCGTATTGATAGGCCAAAGCAATAAAACAACCATTCTA
ATTCGGAAATCTTTATTGCGACGCTGATTACATTCACGTCCAAATGCGTCCCCCTCAATA
ATGTAGGATCCATATAAAGTTAATAACTTATTTCAAGTATTAAATTTTGATCCTCTTATA
TAACACCTAAGTAATACAACTTTATTAGAAACGGCACACCCTCCACCTCCACCAACCTGT
AACACTCCAAAGAGTAAATCAACTCACCTTACTTCACTCATGATATAGGTTGACGCCACC
GCCGTCTCTCCCTCCTCC
GenBank Accession AL752396 [GenBank]
Graphic View Graphic view of gene At4g31340
Predicted Position of Insertion Chr4:15207581 - go to primer design
BLAST e Value 2e-24
Hit Clone Code (BAC ID) F8F16
Hit Gene Code At4g31340 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation myosin heavy chain-like protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 013E06


Last Updated on 10.06.2021 13:37