SimpleSearch - Line and FST details


Line specific information

 
Line ID 013C10
Vector Used pAC106
Line Availability available as T3 set from NASC (N401186)
Segregation Analysis 50:49:43
Confirmed for Hit At3g25780 At3g25790
Parent of DUPLO pair 6789
Parent of pair(s) none

Gene hit At3g25780

 
Sequence (A. th genome BLAST matches underlined) 
>75-K025780-022-019-C10-8409
GAGATTTCAATTGAATATATTTTCCCGGACGATGATGAAGTAACACGTGCGTATATGTCA
AAAGATGCTTTGTGTAGTTTCCACTCGGTTTCGAATTGTCTAAAAGCGTTAGCTAGAGAA
TTTTATGTATTTATTATTTATCGACTTAAAACCGTGTAATATTTATTGAGTATGGGATCC
TCCCTATAGTGAGCCGTCGGATGGCGTTGCGAGAGAAGCAGTCGATCCGTGAGATCAGCC
GACGCACCGGGCAGGCGCGCAACACGATCGCAAAGTATTTGAACGCAAGTATGGGATCCT
CCCTATAGTGAGCNANTCAATTANATTGTTTTTGTTTAGATAAACATTGTTTNGGTATAT
GAAGTGAATAAATGGATTAGTATTTATATTTTAAGTAAGAATTTCTAAATGTTCAACAAT
GTAGAGGAATCTCAAAATAAGACATTTTT
GenBank Accession CR395356 [GenBank]
Graphic View Graphic view of gene At3g25780
Predicted Position of Insertion Chr3:9409262 - go to primer design
BLAST e Value 4e-77
Hit Clone Code (BAC ID) K13N2
Hit Gene Code At3g25780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation allene oxide cyclase 3
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR800309 [GenBank]

Gene hit At3g25790

 
Sequence (A. th genome BLAST matches underlined) 
>75-K012791-022-013-C10-35St
NAATTGNCGTAAGGGATCACGCATAGTCCACTATCCTTCGCAAGACCCTTCCTCTATATA
AGGAATGACATTTCATTTGGAGAGGACAGGGCACCCGGGGATCAGATTGTCGTTTCCCGC
CTTCGGTGTAAACTATCAAAGTTTAAAAATACTCAGGATAGTATAAACTATCAGGGTACC
CGGACATGAAGCCATTTACCAATAATAGACCCAGACGCTGGTATTAGATGCTATAAATAA
ACGATGAAGCAGCGAAGAAAAACTCTGTTTTCATTCACCGGTGACTACTATGGGATCCTC
CCTATAGTGAGTCGTATTACTCANNCCCCCNAANGCCATNATNGCGATAAAGGAAAGGCC
CTCGTCGAAAATGCCCTGCCGACAAAAAAACCAAAAAAGGCCCCCCACCCACCAGAGCAT
CGTGGAAAAAGAAGA
GenBank Accession FR800254 [GenBank]
Graphic View Graphic view of gene At3g25790
Predicted Position of Insertion Chr3:9414026 - go to primer design
BLAST e Value 5e-07
Hit Clone Code (BAC ID) K13N2
Hit Gene Code At3g25790 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation myb-like transcription factor family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37