SimpleSearch - Line and FST details
Line specific information
| Line ID | 017F08 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401604) |
| Segregation Analysis | 50:48:37 |
| Confirmed for Hit | At3g11270 |
| Parent of DUPLO pair | 1804 |
| Parent of pair(s) | none |
Gene hit At3g11270
| Sequence (A. th genome BLAST matches underlined) | >62-K026160-022-017-F08-8409 CACGAACACCCGTTTGATTCTACTAGTCGACTACAATTAAAGGTGTTACCCTGAACATGG TATAAGATTTCTTGGTTCAATGGATAGTTTTCCTTCGATTACGAGGTCAAGGTATGTCCG GATCTCCCGAAGTCGTGCATCCAATCCCTTCATAGCAGTAAGTTTCTGAAAGACCTCCAT TACAGTTGACGAATACTTTCTATTTCCTCCTTATACCGATCCTCTGATTTTGTATTCATA GCATCAATAGTGCCTTCAAAAAGCATTATGAAGCTTGATGATGAAATGTTTAAGTTATGC GTGAACAATGTAACCTCAGTTGCCCCGGTATGGGATCCTCCCTACACCGAGAATCGCTCT AAGTTGTGAAGTCAACTACTGCCCTTCGGAAATGGTCTATCAAAAAGTAATTTATTAACA GTTCCTTTTTGATTCTTCTCTCTATTTA |
| GenBank Accession | CR395190 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:3530830 - go to primer design |
| BLAST e Value | 1e-61 |
| Hit Clone Code (BAC ID) | F11B9 |
| Hit Gene Code | At3g11270 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Mov34/MPN/PAD-1 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g23780
| Sequence (A. th genome BLAST matches underlined) | >62-K013159-022-017-F08-8409 NTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTATAGAT CCCTAAAAAGTAGAGATTTGGACGAAACAAAAGAGGAAACCAGACATCTTGGGAAAAAAC AGAGTCTTACTATTGTTGGGAAAGAAAGTTCCAGGCTATATCTGACTTTTGGTTTTTCTC GTTTTTTTTCCATATATTTTCTTTGGAAGTTTTGATTAATTATTGGGCCGATTATATTAA TTTCTAAACTGATATTGGGCCTGATTAGCTACAACAGCACATTTTGGTAGATAAAATGAT GCCAAAAGCTCGTTTTAAACGTAAACTATGGGATCCTCCCTATAGTGAGTCG |
| GenBank Accession | AL752820 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:10124534 - go to primer design |
| BLAST e Value | 5e-133 |
| Hit Clone Code (BAC ID) | F27L4 |
| Hit Gene Code | At2g23780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At3g23010
| Sequence (A. th genome BLAST matches underlined) | >62-K026159-022-017-F08-8409 NNTTTTGGTGGATATCCGGACAGNAGCCATTTACATTGAATATATCCTGTAGACAAAACT TTCACGATCACCAGTTTGATTCTACTAGTCGACTACCATTATTAGTGTTACCTGAGGATG GCATAAGATTTCTTGGTTTATTGGAGATTTTTCCTTCGATTACGACGTCCAGGTATGTCC GGATCTCCCGAAGTCTATGCTCCATTCCCTTCTTAGCATTAAGATTCTGAAAGTCCTGCA TCACAGTTGATGAATCCTTTCTATTTCCCCCTTATCCGTATCCTCTGATTTTGTATTCCT AGCATCAATAGGGCCCTCGAAGTGCATTTGGAATCTTGCTGATGGAATGATTAAGTTATG CGTGAACAATGTAACCTCAGTTGGCCCGGAATGTGATCCTCCCTACACCGAGAATCGCTC TAAGTTGTGAAGTCCACTAAGGTCATCGGAAATGGAGGATTTGAAGTATTTTAAGGACAG GTCTATAATGGATCATCTGGTTACTTTGCCTAATTCTGCATCCCCGCTCGTGAATTGATT TCCAAA |
| GenBank Accession | CR395189 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:8175426 - go to primer design |
| BLAST e Value | 1e-39 |
| Hit Clone Code (BAC ID) | MXC7 |
| Hit Gene Code | At3g23010 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | receptor like protein 36 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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