SimpleSearch - Line and FST details


Line specific information

 
Line ID 020E05
Vector Used pAC106
Line Availability available as T3 set from NASC (N401877)
Segregation Analysis 100:57:49
Confirmed for Hit At1g21695 At5g16400
Parent of DUPLO pair 986
Parent of pair(s) none

Gene hit At1g21695

 
Sequence (A. th genome BLAST matches underlined) 
>37-K026164-022-020-E05-8409
GGATACGTTCTAAAAATAATTGATCTAATCTAAATCTATAAGTAGTTTCTTATTAGTAGA
ATCCTTATGAATCTTAATTTGATCAAGACAGAAACGCTTTTGTTTACTTTTACCTAATGG
TCGATGGTGACGATTCTTTCAAGAGACCCGGAGCTGTGCCTTTTAAGTGGGAGATCCGAC
CCGGCGTATGGGATCCTCCCTATAGTGAGACNNNNNNNNCNNNNNNNNNNNNNNNNNNNN
GTNTGGGATCCTCCCTNTNNTGNGNCNTNTTNNTCN
GenBank Accession CR395459 [GenBank]
Graphic View Graphic view of gene At1g21695
Predicted Position of Insertion Chr1:7618987 - go to primer design
BLAST e Value 7e-100
Hit Clone Code (BAC ID) F8K7
Hit Gene Code At1g21695 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hydroxyproline-rich glycoprotein family protein
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL753260 [GenBank] CR395459 [GenBank]

Gene hit At5g16400

 
Sequence (A. th genome BLAST matches underlined) 
>37-K013161-022-020-E05-8409
TGATCCATGTAGATTTCCCNGAACTGAAGTCATTACATGTGTGAATATCTCATTGACAGG
ATTTTTATTATATTTATGGCATTACTAACTGTTTTGTATAGTTTGGATGGGATCCTCCCT
ATAGTGTGTCGTGATTACTCACCTATAGNGAGTCGAATTACATAAAGCGCAACTGATTGT
ATTAACCACCATAACGGAGCATTGAATAGTAAACTCATCTCAAGCTTTCATGATGATGGA
AATGGGAACACCTTTTATGCCTATTTATGAAATGTCCATGCTCTAATTCTCCTGACAATC
TGAGTATTGATAACTCCATATCCTTTCGAGTATGTCATTCCTAACACACAAACGGGTACA
AAAGAATGCGTACACAGAACCCCCACCCTGATAGTGCGAAGACTGTATAAGACACTAACA
ATGCTG
GenBank Accession BX572116 [GenBank]
Graphic View Graphic view of gene At5g16400
Predicted Position of Insertion Chr5:5364146 - go to primer design
BLAST e Value 6e-40
Hit Clone Code (BAC ID) MQK4
Hit Gene Code At5g16400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation thioredoxin F2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37